2017

  PANORAMA: Predictive Modeling and Diagnostic Monitoring of Extreme Science Workflows
E. Deelman, C. Carothers, A. Mandal, B. Tierney, J. Vetter, I. Baldin, M. Blanco, R. Ferreira da Silva, M. Kiran, V. Lynch, S. Moore, P. Ruth, DOE NGNS PI Meeting. September 2017
  Data Flow Prioritization for Scientific Workflows Using A Virtual SDX on ExoGENI
A. Mandal, P. Ruth, I. Baldin, R. Ferreira da Silva, E. Deelman, GENI Engineering Conference 25. March 2017

 

2016

  Asterism: An Integrated, Complete, and Open-Source Approach for Running Seismologist Continuous Data-Intensive Analysis on Heterogeneous Systems
R. Ferreira da Silva, R. Filgueira, E. Deelman, M. Atikinson, AGU 2016, San Francisco, California. December 2016.
  Automated Genotypic Imputation of PAGE II Data using Scientific Workflows
K. Vahi, S. Buyske, L. Zhou, T. Matise, E. Deelman, ASHG 2016, Vancouver, Canada. November 2016
  Pegasus: Automating the Execution of Computational Workflows
E. Deelman, K. Vahi, G. Juve, M. Rynge, R. Mayani, R. Ferreira da Silva, M. Livny, K. Wenger, ICT Air Force Research Lab Opening, Marina Del Rey, California. March 2016
  SSI: Distributed Workflow Management Research and Software in Support of Science
E. Deelman, K. Vahi, G. Juve, M. Rynge, R. Mayani, R. Ferreira da Silva, M. Livny, K. Wenger, SI2 PI Workshop, Arlington, Virginia. February 2016

 

2015

  Pegasus WMS: Enabling Large Scale Workflows on National Cyberinfrastructure
K. Vahi, E. Deelman, G. Juve, M. Rynge, R. Mayani, R. Ferreira da Silva, XSEDE 2015, St Louis, Missouri. July 2015.
  Pegasus WMS: Features For Pipelines Across Diverse Resources
K. Vahi, E. Deelman, G. Mehta, M. Rynge, F. Silva, P. Thomas, J. Vockler, B. Berriman, LIGO LSC Meeting, Pasadena, California. March 2015.
  SSI: Distributed Workfow Management Research and Software in Support of Science
E. Deelman, M. Livny, Washington DC., February 2015.

 

2014

  Genome and Transcriptome Free Analysis of RNA-Seq Data using Cloud Computing
T. Souaiaia, R. Mayani, K. Vahi, J. Herstein, O. Evagrafov, T. Chen, E. Deelman, D. Briggs, J. Knowles, ASHG 2014, San Diego, October 2014.
  Compute Pipelines with Advanced Data Management using Pegasus WMS
K. Vahi, M. Rynge, E. Deelman, G. Juve, R. Mayani, R. Ferreira da Silva, ADASS 2014, Calgary, Canada, October 2014.
  Pegasus WMS: Enabling Large Scale Workflows on National Cyberinfrastructure
K. Vahi, E. Deelman, G. Juve, M. Rynge, R. Mayani, R. Ferreira da Silva, XSEDE 2014, Atlanta, July 2014.
  Next Generation Resequencing of Soybean Germplasm for Trait Discovery on XSEDE using Pegasus Workflows and iPlant Infrastructure
T. Joshi, B. Valliyodan, S. M. Khan, Y. Liu, J. V. M. dos Santos, Y. Jiao, D. Xu, H. T. Nguyen, N. Hopkins, M. Rynge, N. Merchant, XSEDE 2014, Atlanta, July 2014.
  ECSS Workflows – An Overview and Update
M. Rynge, M. Pierce, S. Marru, XSEDE 2014, Atlanta, July 2014.
  SSI: Distributed Workflow Management Research and Software in Support of Science
E. Deelman, M. Livny, SI2 PI Meeting, February 2014.

 

2013

  Conducting Large-Scale Imputation Studies on the Cloud
S. Buyske, K. Vahi, E. Deelman, U. Peters, T. Matise, ASHG’13, Boston, October 2013.
  Pegasus WMS: Enabling Large Scale Workflows on National Cyberinfrastructure
K. Vahi, E. Deelman, G. Juve, M. Rynge, R. Mayani, S. Callaghan, P. Maechling, XSEDE’13, San Diego, July 2013.
  Introducing PRECIP – Pegasus Repeatable Experiments for the Cloud in Python
S. Azaroosh, M. Rynge, G. Juve,  E. Deelman, XSEDE’13, San Diego, July 2013.
  Bosco – A simple interface for managing jobs on both XSEDE and campus computing resources
D. Weitzel, D. Fraser, M. Ahronovitz, M. Rynge, XSEDE’13, San Diego, July 2013.
  SSI: Distributed Workflow Management Research and Software in Support of Science
E. Deelman, M. Livny, SI2 PI Meeting, February 2013.

 

2012

  Curating genomic epidemiology data in The PAGE Study
G. Kumaraguruparan, G. Mehta, A. Nato, J. L. Ambite, S. Buyske, R. Mayani, C. Cai, J. Vockler, E. Deelman, T. Matise, ASHG’12, San Francisco, November 2012.
  RseqFlow: Workflows for RNA-Seq data analysis
Y. Wang, G. Mehta , R. Mayani ,T. Souaiaia , Y. Chen, A. Clark , L. Wan, O. V. Evgrafov, J. A. Knowles , E. Deelman, T. Chen, ISMB’12, Long Beach, July 2012.
  Enabling Bioinformatics Workflows on Leadership Class Systems with Virtual Machines
G. Mehta, T. Souaiaia, R. Mayani, Y. Wang, E. Deelman, T. Chen, J. Knowles, XSEDE’12, Chicago, July 2012.
  Pegasus WMS: Enabling Large Scale Workflows on National Cyberinfrastructure
K. Vahi, E. Deelman, G. Juve, G. Mehta, M. Rynge, R. Mayani, S. Callaghan, P. Maechling, XSEDE’12, Chicago, July 2012.
  Leveraging Pegasus 4.0 and GlideinWMS for Data Intensive Workflows on OSG
K. Vahi, E. Deelman, G. Juve, G. Mehta, M. Rynge, R. Mayani, S. Callaghan, P. Maechling, OSG All Hands Meeting’12, Lincoln, March 2012.

 

2011

  Pegasus WMS: Enabling Bioinformatics using Workflow Technologies
G. Mehta, E. Deelman, K. Vahi, Y. Wang, A. Clark, R. Mayani, T. Chen, J. Knowles, 12th International Congress of Human Genetics/61st Annual Meeting of The American Society of Human Genetics, Montreal, Canada, October, 2011.
  Generating Large Scale pedigree drawings for Genetic Studies
R. Mayani, G. Mehta, E. Deelman, K. Seth, J. Vöckler, F. Wang, 12th International Congress of Human Genetics/61st Annual Meeting of The American Society of Human Genetics, Montreal, Canada, October, 2011.
  Stampede: A Framework for Monitoring and Troubleshooting of Large-Scale Applications on National Cyberinfrastructure
F. Silva, C. Brooks, E. Deelman, M. Goode, D. Gunter, G. Juve, G. Mehta, P. Moraes, T. Samak, M. Swany, P. Thomas, K. Vahi, Teragrid 2011, Salt Lake City, June 2011.
  Pegasus WMS: Enabling Large Science on National CyberInfrastructure
K. Vahi, E. Deelman, G. Mehta, M. Rynge, F. Silva, P. Thomas, J. Vockler, B. Berriman, Teragrid 2011, Salt Lake City, June 2011.
  Wrangler: Virtual Cluster Provisioning for the Cloud
G. Juve, E. Deelman, HPDC’11, Best Poster, June 2011.

 

2010

2009

2008

2007

  Workflow Task Clustering for Best Effort Systems with Pegasus
G. Singh, M.H. Su, K. Vahi, E. Deelman, G. Mehta, B. Berriman, J. Good, D. S. Katz, Teragrid, 2007.

2006

2005

2004

2003

2002

 

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