2016

  • [PDF] [DOI] W. Chen, R. Ferreira da Silva, E. Deelman, and T. Fahringer, Dynamic and Fault-Tolerant Clustering for Scientific Workflows, IEEE Transactions on Cloud Computing, vol. 4, iss. 1, pp. 49-62, 2016. (Funding Acknowledgements: NSF IIS-0905032, NSF ACI SI2-SSI 1148515, and NSF FutureGrid 0910812).
    [Bibtex]
    @article{chen-tcc-2015,
    title = {Dynamic and Fault-Tolerant Clustering for Scientific Workflows},
    journal = {{IEEE} Transactions on Cloud Computing},
    volume = {4},
    number = {1},
    pages = {49--62},
    year = {2016},
    author = {Chen, Weiwei and Ferreira da Silva, Rafael and Deelman, Ewa and Fahringer, Thomas},
    note={Funding Acknowledgements: NSF IIS-0905032, NSF ACI SI2-SSI 1148515, and NSF FutureGrid 0910812},
    doi={10.1109/TCC.2015.2427200},
    url={http://pegasus.isi.edu/publications/2015/chen-tcc-2015.pdf}
    }
  • [DOI] E. Deelman, K. Vahi, M. Rynge, G. Juve, R. Mayani, and R. Ferreira da Silva, Pegasus in the Cloud: Science Automation through Workflow Technologies, IEEE Internet Computing, vol. 20, iss. 1, pp. 70-76, 2016. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF ACI 1245926, NSF FutureGrid 0910812, NHGRI 1U01 HG006531-01).
    [Bibtex]
    @article{deelman-ic-2016,
    title = {Pegasus in the Cloud: Science Automation through Workflow Technologies},
    author = {Deelman, Ewa and Vahi, Karan and Rynge, Mats and Juve, Gideon and Mayani, Rajiv and Ferreira da Silva, Rafael},
    journal = {IEEE Internet Computing},
    volume = {20},
    number = {1},
    pages = {70--76},
    year = {2016},
    note = {Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF ACI 1245926, NSF FutureGrid 0910812, NHGRI 1U01 HG006531-01},
    url = {http://dx.doi.org/10.1109/MIC.2016.15},
    doi = {10.1109/MIC.2016.15}
    }
  • [PDF] R. Ferreira da Silva, E. Deelman, R. Filgueira, K. Vahi, M. Rynge, R. Mayani, and B. Mayer, Automating Environmental Computing Applications with Scientific Workflows, in Environmental Computing Workshop (ECW’16), 2016. (Funding Acknowledgments: DOE DESC0012636, NSF ACI SI2-SSI 1148515).
    [Bibtex]
    @inproceedings{ferreiradasilva-ecw-2016,
    author = {Ferreira da Silva, Rafael and Deelman, Ewa and Filgueira, Rosa and Vahi, Karan and Rynge, Mats and Mayani, Rajiv and Mayer, Benjamin},
    title = {Automating Environmental Computing Applications with Scientific Workflows},
    year = {2016},
    note = {Funding Acknowledgments: DOE DESC0012636, NSF ACI SI2-SSI 1148515},
    booktitle = {Environmental Computing Workshop (ECW'16)},
    doi = {},
    pages = {}
    }
  • [PDF] [DOI] P. Gaikwad, A. Mandal, P. Ruth, G. Juve, D. Krol, and E. Deelman, Anomaly Detection for Scientific Workflow Applications on Networked Clouds, in IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016), 2016. (Funding Acknowledgement: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{gaikwad-intercloud-2016,
    author = {Prathamesh Gaikwad and Anirban Mandal and Paul Ruth and Gideon Juve and Dariusz Krol and Ewa Deelman},
    title = {Anomaly Detection for Scientific Workflow Applications on Networked Clouds},
    booktitle = {IEEE 2016 International Conference on High Performance Computing & Simulation (HPCS 2016)},
    year = {2016},
    note = {Funding Acknowledgement: DOE DE-SC0012636},
    doi = {10.1109/HPCSim.2016.7568396}
    }
  • [PDF] D. Krol, J. Kitowski, R. Ferreira da Silva, G. Juve, K. Vahi, M. Rynge, and E. Deelman, Science Automation in Practice: Performance Data Farming in Workflows, in 21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA), 2016. (Funding Acknowledgments: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{krol-etfa-2016,
    author = {Krol, Dariusz and Kitowski, Jacek and Ferreira da Silva, Rafael and Juve, Gideon and Vahi, Karan and Rynge, Mats and Deelman, Ewa},
    title = {Science Automation in Practice: Performance Data Farming in Workflows},
    booktitle = {21st IEEE International Conference on Emerging Technologies and Factory Automation (ETFA)},
    year = {2016},
    note = {Funding Acknowledgments: DOE DE-SC0012636},
    }
  • [PDF] D. Krol, R. Ferreira da Silva, E. Deelman, and V. E. Lynch, Workflow Performance Profiles: Development and Analysis, in Euro-Par 2016: Parallel Processing Workshops, , 2016. (Funding Acknowledgments: DOE DE-SC0012636).
    [Bibtex]
    @incollection{krol-heteropar-2016,
    author = {Krol, Dariusz and Ferreira da Silva, Rafael and Deelman, Ewa and Lynch, Vickie E.},
    title = {Workflow Performance Profiles: Development and Analysis},
    year = {2016},
    note = {Funding Acknowledgments: DOE DE-SC0012636},
    booktitle = {Euro-Par 2016: Parallel Processing Workshops},
    }
  • [PDF] [DOI] A. Mandal, P. Ruth, I. Baldin, D. Krol, G. Juve, R. Mayani, R. Ferreira da Silva, E. Deelman, J. Meredith, J. Vetter, V. Lynch, B. Mayer, J. Wynne III, M. Blanco, C. Carothers, J. LaPre, and B. Tierney, Toward and End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific Workflows, in Workshop on Large-Scale Parallel Processing (LSPP 2016), 2016, pp. 1370-1379. (Funding Acknowledgments: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{mandal-lspp-2016,
    author = {Mandal, Anirban and Ruth, Paul and Baldin, Ilya and Krol, Dariusz and Juve, Gideon and Mayani, Rajiv and Ferreira da Silva, Rafael and Deelman, Ewa and Meredith, Jeremy and Vetter, Jeffrey and Lynch, Vickie and Mayer, Ben and Wynne III, James and Blanco, Mark and Carothers, Chris and LaPre, Justin and Tierney, Brian},
    title = {Toward and End-to-end Framework for Modeling, Monitoring, and Anomaly Detection for Scientific Workflows},
    booktitle = {{Workshop on Large-Scale Parallel Processing (LSPP 2016)}},
    year = {2016},
    note = {Funding Acknowledgments: DOE DE-SC0012636},
    url = {http://pegasus.isi.edu/publications/2016/mandal-lspp-2016.pdf},
    doi = {10.1109/IPDPSW.2016.202},
    pages = {1370--1379}
    }
  • [PDF] [DOI] H. Nawaz, G. Juve, R. Ferreira da Silva, and E. Deelman, Performance Analysis of an I/O-Intensive Workflow executing on Google Cloud and Amazon Web Services, in 18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM), 2016, pp. 535-544. (Funding Acknowledgements: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{nawaz-apdcm-2016,
    author={Nawaz, Hassan and Juve, Gideon and Ferreira da Silva, Rafael and Deelman, Ewa},
    title={Performance Analysis of an I/O-Intensive Workflow executing on Google Cloud and Amazon Web Services},
    booktitle={{18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM)}},
    year={2016},
    note={Funding Acknowledgements: DOE DE-SC0012636},
    url={http://pegasus.isi.edu/publications/2016/nawaz-apdcm-2016.pdf},
    doi = {10.1109/IPDPSW.2016.90},
    pages = {535--544}
    }
  • [DOI] W. L. Poehlman, M. Rynge, C. Branton, D. Balamurugan, and F. A. Feltus, OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid, Bioinformatics and Biology Insights, vol. 10, pp. 133-141, 2016. .
    [Bibtex]
    @article{10.4137/BBI.S38193,
    author={William L. Poehlman and Mats Rynge and Chris Branton and D. Balamurugan and Frank A. Feltus},
    journal={Bioinformatics and Biology Insights},
    publisher={Libertas Academica},
    title={OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid},
    year={2016},
    month={08},
    volume={10},
    url={http://www.la-press.com/osg-gem-gene-expression-matrix-construction-using-the-open-science-gri-article-a5814},
    pages={133--141},
    abstract={
    High-throughput DNA sequencing technology has revolutionized the study of gene expression while introducing significant computational challenges for biologists. These computational challenges include access to sufficient computer hardware and functional data processing workflows. Both these challenges are addressed with our scalable, open-source Pegasus workflow for processing high-throughput DNA sequence datasets into a gene expression matrix (GEM) using computational resources available to U.S.-based researchers on the Open Science Grid (OSG). We describe the usage of the workflow (OSG-GEM), discuss workflow design, inspect performance data, and assess accuracy in mapping paired-end sequencing reads to a reference genome. A target OSG-GEM user is proficient with the Linux command line and possesses basic bioinformatics experience. The user may run this workflow directly on the OSG or adapt it to novel computing environments.
    },
    doi={10.4137/BBI.S38193}
    }
  • [PDF] [DOI] I. Santana-Perez, R. Ferreira da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, and O. Corcho, Reproducibility of Execution Environments in Computational Science Using Semantics and Clouds, Future Generation Computer Systems, vol. to appear, 2016. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF FutureGrid 0910812).
    [Bibtex]
    @article{santanaperez-fgcs-2016,
    title = {Reproducibility of Execution Environments in Computational Science Using Semantics and Clouds},
    author = {Santana-Perez, Idafen and Ferreira da Silva, Rafael and Rynge, Mats and Deelman, Ewa and Perez-Hernandez, Maria S. and Corcho, Oscar},
    journal = {Future Generation Computer Systems},
    volume = {to appear},
    year = {2016},
    doi = {10.1016/j.future.2015.12.017},
    note = {Funding Acknowledgements: NSF ACI SI2-SSI 1148515, NSF FutureGrid 0910812},
    url = {http://dx.doi.org/10.1016/j.future.2015.12.017}
    }
  • [PDF] [DOI] S. Schlagkamp, R. Ferreira da Silva, E. Deelman, and U. Schwiegelshohn, Understanding User Behavior: from HPC to HTC, in International Conference on Computational Science (ICCS), 2016. (Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{schlagkamp-iccs-2016,
    author = {Schlagkamp, Stephan and Ferreira da Silva, Rafael and Deelman, Ewa and Schwiegelshohn, Uwe},
    title = {Understanding User Behavior: from HPC to HTC},
    booktitle = {{International Conference on Computational Science (ICCS)}},
    year = {2016},
    note = {Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636},
    url = {http://pegasus.isi.edu/publications/2016/schlagkamp-iccs-2016.pdf},
    doi = {10.1016/j.procs.2016.05.397}
    }
  • [PDF] [DOI] S. Schlagkamp, R. Ferreira da Silva, W. Allcock, E. Deelman, and U. Schwiegelshohn, Consecutive Job Submission Behavior at Mira Supercomputer, in 25th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC), 2016. (Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{schlagkamp-hpdc-2016,
    author={Schlagkamp, Stephan and Ferreira da Silva, Rafael and Allcock, William and Deelman, Ewa and Schwiegelshohn, Uwe},
    title={Consecutive Job Submission Behavior at Mira Supercomputer},
    booktitle={{25th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC)}},
    year={2016},
    note={Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636},
    url={http://pegasus.isi.edu/publications/2016/schlagkamp-hpdc-2016.pdf},
    doi = {10.1145/2907294.2907314}
    }
  • [PDF] [DOI] S. Schlagkamp, R. Ferreira da Silva, J. Renker, and G. Rinkenauer, Analyzing Users in Parallel Computing: A User-Oriented Study, in 14th International Conference on High Performance Computing & Simulation, 2016. .
    [Bibtex]
    @inproceedings{schlagkamp-hpcs-2016,
    author = {Schlagkamp, Stephan and Ferreira da Silva, Rafael and Renker, Johanna and Rinkenauer, Gerhard},
    title = {Analyzing Users in Parallel Computing: A User-Oriented Study},
    booktitle = {14th International Conference on High Performance Computing & Simulation},
    series = {HPCS'16},
    year = {2016},
    doi = {10.1109/HPCSim.2016.7568362},
    }
  • [PDF] [DOI] S. Schlagkamp, M. Hofmann, L. Eufinger, and R. Ferreira da Silva, Increasing Waiting Time Satisfaction in Parallel Job Scheduling via a Flexible MILP Approach, in 14th International Conference on High Performance Computing & Simulation, 2016. .
    [Bibtex]
    @inproceedings{schlagkamp-hpcs-2016a,
    author = {Schlagkamp, Stephan and Hofmann, Matthias and Eufinger, Lars and Ferreira da Silva, Rafael},
    title = {Increasing Waiting Time Satisfaction in Parallel Job Scheduling via a Flexible MILP Approach},
    booktitle = {14th International Conference on High Performance Computing & Simulation},
    series = {HPCS'16},
    year = {2016},
    doi = {10.1109/HPCSim.2016.7568331},
    }
  • [DOI] T. L. Swetnam, J. D. Pelletier, C. Rasmussen, N. R. Callahan, N. Merchant, E. Lyons, M. Rynge, Y. Liu, V. Nandigam, and C. Crosby, Scaling GIS Analysis Tasks from the Desktop to the Cloud Utilizing Contemporary Distributed Computing and Data Management Approaches: A Case Study of Project-based Learning and Cyberinfrastructure Concepts, in Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale, New York, NY, USA, 2016, p. 21:1–21:6. .
    [Bibtex]
    @inproceedings{Swetnam:2016:SGA:2949550.2949573,
    author = {Swetnam, T. L. and Pelletier, J. D. and Rasmussen, C. and Callahan, N. R. and Merchant, N. and Lyons, E. and Rynge, M. and Liu, Y. and Nandigam, V. and Crosby, C.},
    title = {Scaling GIS Analysis Tasks from the Desktop to the Cloud Utilizing Contemporary Distributed Computing and Data Management Approaches: A Case Study of Project-based Learning and Cyberinfrastructure Concepts},
    booktitle = {Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale},
    series = {XSEDE16},
    year = {2016},
    isbn = {978-1-4503-4755-6},
    location = {Miami, USA},
    pages = {21:1--21:6},
    articleno = {21},
    numpages = {6},
    url = {http://doi.acm.org/10.1145/2949550.2949573},
    doi = {10.1145/2949550.2949573},
    acmid = {2949573},
    publisher = {ACM},
    address = {New York, NY, USA},
    keywords = {CyberGIS, GDAL, GRASS, Makeflow, Work Queue},
    }

2015

  • [DOI] P. Bryk, M. Malawski, G. Juve, and E. Deelman, Storage-aware Algorithms for Scheduling of Workflow Ensembles in Clouds, Journal of Grid Computing, vol. 14, iss. 2, pp. 359-378, 2015. (Funding Acknowledgements: DOE ER26110).
    [Bibtex]
    @article{bryk-jgc-2015,
    author={Piotr Bryk and Maciej Malawski and Gideon Juve and Ewa Deelman},
    title={Storage-aware Algorithms for Scheduling of Workflow Ensembles in Clouds},
    journal={Journal of Grid Computing},
    volume={14},
    number={2},
    pages={359--378},
    year={2015},
    note={Funding Acknowledgements: DOE ER26110},
    doi={10.1007/s10723-015-9355-6},
    url={http://link.springer.com/article/10.1007%2Fs10723-015-9355-6}
    }
  • [PDF] [DOI] W. Chen, R. Ferreira da Silva, E. Deelman, and R. Sakellariou, Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow Executions, Future Generation Computer Systems, vol. 46, pp. 69-84, 2015. (Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812).
    [Bibtex]
    @article{chen-fgcs-2014,
    author={Weiwei Chen and Ferreira da Silva, Rafael and Ewa Deelman and Rizos Sakellariou},
    url={http://pegasus.isi.edu/publications/2014/2014-fgcs-chen.pdf},
    title={Using Imbalance Metrics to Optimize Task Clustering in Scientific Workflow Executions},
    journal={Future Generation Computer Systems},
    volume={46},
    pages={69--84},
    year={2015},
    note={Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812},
    doi={10.1016/j.future.2014.09.014}
    }
  • [PDF] [DOI] E. Deelman, K. Vahi, G. Juve, M. Rynge, S. Callaghan, P. J. Maechling, R. Mayani, W. Chen, R. Ferreira da Silva, M. Livny, and K. Wenger, Pegasus: a Workflow Management System for Science Automation, Future Generation Computer Systems, vol. 46, pp. 17-35, 2015. (Funding Acknowledgements: NSF ACI SDCI 0722019, NSF ACI SI2-SSI 1148515 and NSF OCI-1053575).
    [Bibtex]
    @article{deelman-fgcs-2015,
    author={Ewa Deelman and Karan Vahi and Gideon Juve and Mats Rynge and Scott Callaghan and Philip J Maechling and Rajiv Mayani and Weiwei Chen and Ferreira da Silva, Rafael and Miron Livny and Kent Wenger},
    url={http://pegasus.isi.edu/publications/2014/2014-fgcs-deelman.pdf},
    title={Pegasus: a Workflow Management System for Science Automation},
    journal={Future Generation Computer Systems},
    volume={46},
    pages={17--35},
    year={2015},
    note={Funding Acknowledgements: NSF ACI SDCI 0722019, NSF ACI SI2-SSI 1148515 and NSF OCI-1053575},
    doi={10.1016/j.future.2014.10.008}
    }
  • [DOI] E. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, and R. Ferreira da Silva, PANORAMA: An Approach to Performance Modeling and Diagnosis of Extreme Scale Workflows, International Journal of High Performance Computing Applications, vol. to appear, 2015. (Funding Acknowledgements: DOE DE-SC0012636).
    [Bibtex]
    @article{deelman-hpc-2015,
    title = {{PANORAMA}: An Approach to Performance Modeling and Diagnosis of Extreme Scale Workflows},
    journal = {International Journal of High Performance Computing Applications},
    volume = {to appear},
    year = {2015},
    author = {Ewa Deelman and Christopher Carothers and Anirban Mandal and Brian Tierney and Jeffrey S. Vetter and Ilya Baldin and Claris Castillo and Gideon Juve and Dariusz Krol and Vickie Lynch and Ben Mayer and Jeremy Meredith and Thomas Proffen and Paul Ruth and Ferreira da Silva, Rafael},
    note = {Funding Acknowledgements: DOE DE-SC0012636},
    doi = {10.1177/1094342015594515},
    url = {http://dx.doi.org/10.1177/1094342015594515}
    }
  • [PDF] E. Deelman, C. Carothers, A. Mandal, B. Tierney, J. S. Vetter, I. Baldin, C. Castillo, G. Juve, D. Krol, V. Lynch, B. Mayer, J. Meredith, T. Proffen, P. Ruth, and R. Ferreira da Silva, Panorama: Modeling The Performance of Scientific Workflows, in Workshop on Modeling and Simulation of Systems and Applications (ModSim 2015), 2015. (Funding Acknowledgements: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{deelman-modsim-2015,
    title = {Panorama: Modeling The Performance of Scientific Workflows},
    booktitle = {Workshop on Modeling and Simulation of Systems and Applications ({ModSim} 2015)},
    year = {2015},
    author = {Ewa Deelman and Christopher Carothers and Anirban Mandal and Brian Tierney and Jeffrey S. Vetter and Ilya Baldin and Claris Castillo and Gideon Juve and Dariusz Krol and Vickie Lynch and Ben Mayer and Jeremy Meredith and Thomas Proffen and Paul Ruth and Ferreira da Silva, Rafael},
    note = {Funding Acknowledgements: DOE DE-SC0012636},
    url = {http://pegasus.isi.edu/publications/2015/deelman-modsim-2015.pdf},
    }
  • [PDF] [DOI] R. Ferreira da Silva, G. Juve, M. Rynge, E. Deelman, and M. Livny, Online Task Resource Consumption Prediction for Scientific Workflows, Parallel Processing Letters, vol. 25, iss. 3, 2015. (Funding Acknowledgements: DOE ER26110).
    [Bibtex]
    @article{ferreiradasilva-ppl-2015,
    title = {Online Task Resource Consumption Prediction for Scientific Workflows},
    author = {Ferreira da Silva, Rafael and Juve, Gideon and Rynge, Mats and Deelman, Ewa and Livny, Miron},
    journal = {Parallel Processing Letters},
    volume = {25},
    number = {3},
    year = {2015},
    note = {Funding Acknowledgements: DOE ER26110},
    doi = {10.1142/S0129626415410030},
    url = {http://www.worldscientific.com/doi/abs/10.1142/S0129626415410030},
    }
  • [PDF] [DOI] R. Ferreira da Silva, M. Rynge, G. Juve, I. Sfiligoi, E. Deelman, J. Letts, F. Wurthwein, and M. Livny, Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC, Procedia Computer Science, International Conference On Computational Science, ICCS 2015 Computational Science at the Gates of Nature, vol. 51, pp. 39-48, 2015. (Funding Acknowledgements: DOE ER26110).
    [Bibtex]
    @article{ferreiradasilva2015iccs,
    author={Ferreira da Silva, Rafael and Rynge, Mats and Juve, Gideon and Sfiligoi, Igor and Deelman, Ewa and Letts, James and Wurthwein, Frank and Livny, Miron},
    title={Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid ({CMS}) Experiment at {LHC}},
    year={2015},
    journal={Procedia Computer Science, International Conference On Computational Science, ICCS 2015 Computational Science at the Gates of Nature},
    pages={39--48},
    volume={51},
    doi={10.1016/j.procs.2015.05.190},
    note={Funding Acknowledgements: DOE ER26110},
    url={http://pegasus.isi.edu/publications/2015/FerreiradaSilva-ICCS-2015.pdf}
    }
  • [PDF] [DOI] T. Glatard, R. Ferreira da Silva, N. Boujelben, R. Adalat, N. Beck, P. Rioux, M. Rousseau, E. Deelman, and A. C. Evans, Boutiques: an application-sharing system based on Linux containers, in NeuroInformatics 2015, 2015. .
    [Bibtex]
    @inproceedings{glatard-neuroinformatics-2015,
    author={Glatard, Tristan and Ferreira da Silva, Rafael and Boujelben, Nouha and Adalat, Reza and Beck, Natacha and Rioux, Pierre and Rousseau, Marc-Etienne and Deelman, Ewa and Evans, Alan C.},
    url={http://dx.doi.org/10.3389/conf.fnins.2015.91.00012},
    doi={10.3389/conf.fnins.2015.91.00012},
    title={Boutiques: an application-sharing system based on Linux containers},
    booktitle={NeuroInformatics 2015},
    year={2015}
    }
  • [PDF] [DOI] T. Glatard, L. B. Lewis, R. Ferreira da Silva, R. Adalat, N. Beck, C. Lepage, P. Rioux, M. Rousseau, T. Sherif, E. Deelman, N. Khalili-Mahani, and A. C. Evans, Reproducibility of neuroimaging analyses across operating systems, Frontiers in Neuroinformatics, vol. 9, iss. 12, 2015. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515} url={http://journal.frontiersin.org/article/10.3389/fninf.2015.00012/abstract).
    [Bibtex]
    @article{glatard-neuroinformatics-2015,
    title={Reproducibility of neuroimaging analyses across operating systems},
    journal={Frontiers in Neuroinformatics},
    volume={9},
    number={12},
    pages={},
    year={2015},
    doi={10.3389/fninf.2015.00012},
    author={Glatard, Tristan and Lewis, Lindsay Burke and Ferreira da Silva, Rafael and Adalat, Reza and Beck, Natacha and Lepage, Claude and Rioux, Pierre and Rousseau, Marc-Etienne and Sherif, Tarek and Deelman, Ewa and Khalili-Mahani, Najmeh and Evans, Alan Charles},
    note={Funding Acknowledgements: NSF ACI SI2-SSI 1148515}
    url={http://journal.frontiersin.org/article/10.3389/fninf.2015.00012/abstract}
    }
  • [PDF] [DOI] J. Howison, E. Deelman, M. J. McLennan, R. Ferreira da Silva, and J. D. Herbsleb, Understanding the scientific software ecosystem and its impact: Current and future measures, Research Evaluation, vol. 24, iss. 4, pp. 454-470, 2015. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515).
    [Bibtex]
    @article{howison-reseval-2015,
    author = {Howison, James and Deelman, Ewa and McLennan, Michael J. and Ferreira da Silva, Rafael and Herbsleb, James D.},
    title = {Understanding the scientific software ecosystem and its impact: Current and future measures},
    journal = {Research Evaluation},
    year = {2015},
    volume = {24},
    number = {4},
    pages = {454--470},
    doi = {10.1093/reseval/rvv014},
    note = {Funding Acknowledgements: NSF ACI SI2-SSI 1148515},
    url={http://rev.oxfordjournals.org/content/early/2015/07/26/reseval.rvv014}
    }
  • [PDF] [DOI] G. Juve, B. Tovar, R. Ferreira da Silva, D. Krol, D. Thain, E. Deelman, W. Allcock, and M. Livny, Practical Resource Monitoring for Robust High Throughput Computing, in Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications, 2015. (Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{juve-hpcmaspa-2015,
    author = {Juve, Gideon and Tovar, Benjamin and Ferreira da Silva, Rafael and Krol, Dariusz and Thain, Douglas and Deelman, Ewa and Allcock, William and Livny, Miron},
    title = {Practical Resource Monitoring for Robust High Throughput Computing},
    booktitle = {Workshop on Monitoring and Analysis for High Performance Computing Systems Plus Applications},
    year = {2015},
    url = {http://pegasus.isi.edu/publications/2015/juve-hpcmaspa-2015.pdf},
    note = {Funding Acknowledgements: DOE ER26110, DOE DE-SC0012636},
    doi={10.1109/CLUSTER.2015.115},
    }
  • [PDF] [DOI] M. Malawski, G. Juve, E. Deelman, and J. Nabrzyski, Algorithms for Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds, Future Generator Computer Systems, vol. 48, pp. 1-18, 2015. (Funding Acknowledgements: DOE ER26110, NSF ACI SI2-SSI 1148515).
    [Bibtex]
    @article{malawski2015fgcs,
    author={Maciej Malawski and Gideon Juve and Ewa Deelman and Jarek Nabrzyski},
    title={Algorithms for Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds},
    journal={Future Generator Computer Systems},
    volume={48},
    year={2015},
    pages={1--18},
    url={http://pegasus.isi.edu/publications/2015/2015-fgcs-malawski.pdf},
    doi={10.1016/j.future.2015.01.004},
    note={Funding Acknowledgements: DOE ER26110, NSF ACI SI2-SSI 1148515}
    }
  • [PDF] [DOI] M. Malawski, K. Figiela, M. Bubak, E. Deelman, and J. Nabrzyski, Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost Optimization, Scientific Programming, vol. 2015, pp. 1-13, 2015. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515, DOE ER26110).
    [Bibtex]
    @article{malawski2015scientificprogramming,
    author={Maciej Malawski and Kamil Figiela and Marian Bubak and Ewa Deelman and Jarek Nabrzyski},
    title={Scheduling Multilevel Deadline-Constrained Scientific Workflows on Clouds Based on Cost Optimization},
    journal={Scientific Programming},
    volume={2015},
    pages={1--13},
    doi={10.1155/2015/680271},
    year={2015},
    url={http://pegasus.isi.edu/publications/2015/2015-scientific-programming-multilevel.pdf},
    note={Funding Acknowledgements: NSF ACI SI2-SSI 1148515, DOE ER26110}
    }
  • [DOI] A. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, G. Juve, M. Rynge, E. Deelman, and J. Chase, Adapting Scientific Workflows on Networked Clouds Using Proactive Introspection, in IEEE/ACM Utility and Cloud Computing (UCC), 2015. (Funding Acknowledgements: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872)).
    [Bibtex]
    @inproceedings{mandal-ucc-2015,
    author={Anirban Mandal and Paul Ruth and Ilya Baldin and Yufeng Xin and Claris Castillo and Gideon Juve and Mats Rynge and Ewa Deelman and Jeff Chase},
    title={Adapting Scientific Workflows on Networked Clouds Using Proactive Introspection},
    booktitle={{IEEE/ACM Utility and Cloud Computing (UCC)}},
    year={2015},
    note={Funding Acknowledgements: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872)},
    doi = {10.1109/UCC.2015.32}
    }
  • [PDF] B. Mayer, P. Worley, R. Ferreira da Silva, and A. Gaddis, Climate Science Performance, Data and Productivity on Titan, in Cray User Group Conference, 2015. (Funding Acknowledgements: DOE DE-SC0012636).
    [Bibtex]
    @inproceedings{mayer-cug-2015,
    title = {Climate Science Performance, Data and Productivity on Titan},
    author = {Mayer, Benjamin and Worley, Patrick and Ferreira da Silva, Rafael and Gaddis, Abigail},
    booktitle = {Cray User Group Conference},
    year = {2015},
    url = {http://pegasus.isi.edu/publications/2015/mayer-cug-2015.pdf},
    note = {Funding Acknowledgements: DOE DE-SC0012636}
    }
  • [PDF] R. Oda, D. Cordeiro, R. Ferreira da Silva, E. Deelman, and K. Braghetto, The Case for Resource Sharing in Scientific Workflow Executions, in XVI Simposio em Sistemas Computacionais de Alto Desempenho (WSCAD), 2015. (Funding Acknowledgements: NSF ACI SI2-SSI 1148515).
    [Bibtex]
    @inproceedings{oda-wscad-2015,
    title = {The Case for Resource Sharing in Scientific Workflow Executions},
    booktitle = {XVI Simposio em Sistemas Computacionais de Alto Desempenho (WSCAD)},
    year = {2015},
    author = {Oda, Ricardo and Cordeiro, Daniel and Ferreira da Silva, Rafael and Deelman, Ewa and Braghetto, Kelly},
    note = {Funding Acknowledgements: NSF ACI SI2-SSI 1148515},
    url = {http://pegasus.isi.edu/publications/2015/oda-wscad-2015.pdf}
    }
  • [PDF] R. Quick, S. Hayashi, S. Meroueh, M. Rynge, S. Teige, B. Wang, and D. Xu, Building a Chemical-Protein Interactome on the Open Science Grid, Proceedings of Science, International Symposium on Grids and Clouds (ISGC) 2015, 2015. .
    [Bibtex]
    @article{osg-splinter-2015,
    author={Quick, Rob and Hayashi, Soichi and Meroueh, Samy and Rynge, Mats and Teige, Scott and Wang, Bo and Xu, David},
    title={Building a Chemical-Protein Interactome on the Open Science Grid},
    journal={Proceedings of Science, International Symposium on Grids and Clouds (ISGC) 2015},
    year={2015},
    url={http://pegasus.isi.edu/publications/2015/ISGC2015_024.pdf}
    }

2014

  • [PDF] R. Ferreira da Silva, T. Fahringer, J. J. Durillo, and E. Deelman, A Unified Approach for Modeling and Optimization of Energy, Makespan and Reliability for Scientific Workflows on Large-Scale Computing Infrastructures, in Workshop on Modeling and Simulation of Systems and Applications (MODSIM), 2014. (Funding Acknowledgements: DOE contract for dv/dt ER26110).).
    [Bibtex]
    @inproceedings{silva2014modsim,
    author={Ferreira da Silva, Rafael and Thomas Fahringer and Juan J. Durillo and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2014/2014-modsim.pdf},
    title={A Unified Approach for Modeling and Optimization of Energy, Makespan and Reliability for Scientific Workflows on Large-Scale Computing Infrastructures},
    booktitle={Workshop on Modeling and Simulation of Systems and Applications (MODSIM)},
    year={2014},
    note={Funding Acknowledgements: DOE contract for dv/dt ER26110).}
    }
  • [PDF] [DOI] R. Ferreira da Silva, W. Chen, G. Juve, K. Vahi, and E. Deelman, Community Resources for Enabling Research in Distributed Scientific Workflows, in 10th IEEE International Conference on e-Science (eScience 2014), 2014. (Funding Acknowledgements: OCI SI2-SSI program grant #1148515, DOE contract for dv/dt ER26110).
    [Bibtex]
    @inproceedings{silva2014community,
    author={Ferreira da Silva, Rafael and Weiwei Chen and Gideon Juve and Karan Vahi and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2014/2014-escience.pdf},
    title={Community Resources for Enabling Research in Distributed Scientific Workflows},
    booktitle={10th IEEE International Conference on e-Science (eScience 2014)},
    year={2014},
    note={Funding Acknowledgements: OCI SI2-SSI program grant #1148515, DOE contract for dv/dt ER26110},
    doi={10.1109/eScience.2014.44}
    }
  • [PDF] T. Glatard, L. B. Lewis, R. Ferreira da Silva, M. Rousseau, C. Lepage, P. Rioux, N. Mahani, E. Deelman, and A. C. Evans, Extending provenance information in CBRAIN to address reproducibility issues across computing platforms, in NeuroInformatics 2014, 2014. .
    [Bibtex]
    @inproceedings{glatard2014provenance,
    author={Tristan Glatard and Lindsay B Lewis and Ferreira da Silva, Rafael and Marc-Etienne Rousseau and Claude Lepage and Pierre Rioux and Najmeh Mahani and Ewa Deelman and Alan C Evans},
    url={http://pegasus.isi.edu/publications/2014/2014-neuroinformatics.pdf},
    title={Extending provenance information in CBRAIN to address reproducibility issues across computing platforms},
    booktitle={NeuroInformatics 2014},
    year={2014}
    }
  • [PDF] G. Juve, B. Tovar, R. Ferreira da Silva, C. Robinson, D. Thain, E. Deelman, W. Allcock, and M. Livny, “Practical Resource Monitoring for Robust High Throughput Computing,” University of Southern California, Technical Report 14-950, 2014 (Funding Acknowledgements: DOE contract for dv/dt ER26110).
    [Bibtex]
    @techreport{juve2014monitoring,
    author={Gideon Juve and Benjamin Tovar and Ferreira da Silva, Rafael and Casey Robinson and Douglas Thain and Ewa Deelman and William Allcock and Miron Livny},
    url={http://pegasus.isi.edu/publications/2014/2014-dvdtreport.pdf},
    title={Practical Resource Monitoring for Robust High Throughput Computing},
    institution={University of Southern California},
    number={Technical Report 14-950},
    year={2014},
    note={Funding Acknowledgements: DOE contract for dv/dt ER26110}
    }
  • [DOI] M. Malawski, K. Figiela, M. Bubak, E. Deelman, and J. Nabrzyski, Cost Optimization of Execution of Multi-level Deadline-Constrained Scientific Workflows on Clouds, Parallel Processing and Applied Mathematics, pp. 251-260, 2014. (Funding Acknowledgements: OCI SI2-SSI program grant #1148515).
    [Bibtex]
    @article{malawski2014optimization,
    author={Maciej Malawski and Kamil Figiela and Marian Bubak and Ewa Deelman and Jarek Nabrzyski},
    url={http://dx.doi.org/10.1007/978-3-642-55224-3_24},
    doi={10.1007/978-3-642-55224-3_24},
    title={Cost Optimization of Execution of Multi-level Deadline-Constrained Scientific Workflows on Clouds},
    journal={Parallel Processing and Applied Mathematics},
    pages={251-260},
    publisher={Springer Berlin Heidelberg},
    year={2014},
    note={Funding Acknowledgements: OCI SI2-SSI program grant #1148515}
    }
  • [DOI] M. McLennan, S. Clark, E. Deelman, M. Rynge, K. Vahi, F. McKenna, D. Kearney, and C. Song, HUBzero and Pegasus: integrating scientific workflows into science gateways, Concurrency and Computation: Practice and Experience, 2014. (Funding Acknowledgements: OCI SI2-SSI program grant #1148515, OCI SDCI program grant #0722019).
    [Bibtex]
    @article{mclennan2014hubzero,
    author={Michael McLennan and Steven Clark and Ewa Deelman and Mats Rynge and Karan Vahi and Frank McKenna and Derrick Kearney and Carol Song},
    url={http://dx.doi.org/10.1002/cpe.3257},
    doi={10.1002/cpe.3257},
    title={HUBzero and Pegasus: integrating scientific workflows into science gateways},
    journal={Concurrency and Computation: Practice and Experience},
    year={2014},
    note={Funding Acknowledgements: OCI SI2-SSI program grant #1148515, OCI SDCI program grant #0722019}
    }
  • [PDF] [DOI] I. Pietri, G. Juve, E. Deelman, and R. Sakellariou, A Performance Model to Estimate Execution Time of Scientific Workflows on the Cloud, in 9th Workshop on Workflows in Support of Large-Scale Science (WORKS), 2014. (Funding Acknowledgements: DOE contract for dv/dt ER26110).
    [Bibtex]
    @inproceedings{pietri2014estimate,
    author={Ilia Pietri and Gideon Juve and Ewa Deelman and Rizos Sakellariou},
    url={http://pegasus.isi.edu/publications/2014/pietri-works14.pdf},
    title={A Performance Model to Estimate Execution Time of Scientific Workflows on the Cloud},
    booktitle={9th Workshop on Workflows in Support of Large-Scale Science (WORKS)},
    year={2014},
    note={Funding Acknowledgements: DOE contract for dv/dt ER26110},
    doi={10.1109/WORKS.2014.12}
    }
  • [PDF] I. Santana-Perez, R. Ferreira da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, and O. Corcho, A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study, in 1st International Workshop on Reproducibility in Parallel Computing (REPPAR), in conjunction with Euro-Par 2014, 2014. (Funding Acknowledgements: NSF FutureGrid 0910812).
    [Bibtex]
    @inproceedings{santanaperez2014semantic,
    author={Idafen Santana-Perez and Ferreira da Silva, Rafael and Mats Rynge and Ewa Deelman and Maria S. Perez-Hernandez and Oscar Corcho},
    url={http://pegasus.isi.edu/publications/2014/2014-reppar.pdf},
    title={A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study},
    booktitle={1st International Workshop on Reproducibility in Parallel Computing (REPPAR), in conjunction with Euro-Par 2014},
    year={2014},
    note={Funding Acknowledgements: NSF FutureGrid 0910812}
    }
  • [PDF] I. Santana-Perez, R. Ferreira da Silva, M. Rynge, E. Deelman, M. S. Perez-Hernandez, and O. Corcho, Leveraging Semantics to Improve Reproducibility in Scientific Workflows, in The reproducibility at XSEDE workshop, 2014. (Funding Acknowledgements: NSF FutureGrid 0910812).
    [Bibtex]
    @inproceedings{santanaperez2014reproducibility,
    author={Idafen Santana-Perez and Ferreira da Silva, Rafael and Mats Rynge and Ewa Deelman and Maria S. Perez-Hernandez and Oscar Corcho},
    url={http://pegasus.isi.edu/publications/2014/2014-xsede.pdf},
    title={Leveraging Semantics to Improve Reproducibility in Scientific Workflows},
    booktitle={The reproducibility at XSEDE workshop},
    year={2014},
    note={Funding Acknowledgements: NSF FutureGrid 0910812}
    }
  • [PDF] [DOI] S. Srinivasan, G. Juve, R. Ferreira da Silva, K. Vahi, and E. Deelman, A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions, in 9th Workshop on Workflows in Support of Large-Scale Science (WORKS), 2014. (Funding Acknowledgements: OCI SI2-SSI program grant #1148515).
    [Bibtex]
    @inproceedings{srinivasan2014cleanup,
    author={Sudarshan Srinivasan and Gideon Juve and Ferreira da Silva, Rafael and Karan Vahi and Ewa Deelman},
    title={A Cleanup Algorithm for Implementing Storage Constraints in Scientific Workflow Executions},
    booktitle={9th Workshop on Workflows in Support of Large-Scale Science (WORKS)},
    year={2014},
    note={Funding Acknowledgements: OCI SI2-SSI program grant #1148515},
    url={http://pegasus.isi.edu/publications/2014/2014-works.pdf},
    doi={10.1109/WORKS.2014.8}
    }

2013

  • [PDF] S. Azarnoosh, M. Rynge, G. Juve, E. D. M. Nieć, M. Malawski, and R. Ferreira da Silva, Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud, in Workshop on Cloud Computing for Research Collaborations (CRC), 2013. (Funding Acknowledgements: National Science Foundation under Grant No. 0910812 and AWS Educational Grant).
    [Bibtex]
    @inproceedings{azarnoosh2013precip,
    author={Sepideh Azarnoosh and Mats Rynge and Gideon Juve and Ewa Deelman Michal Nieć and Maciej Malawski and Ferreira da Silva, Rafael},
    url={http://pegasus.isi.edu/publications/2013/precip-cloudcom-2013.pdf},
    title={Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud},
    booktitle={Workshop on Cloud Computing for Research Collaborations (CRC)},
    year={2013},
    note={Funding Acknowledgements: National Science Foundation under Grant No. 0910812 and AWS Educational Grant}
    }
  • B. G. Berriman, G. Juve, J. Vöckler, E. Deelman, and M. Rynge, The Application of Cloud Computing to Scientific Workflows: A Study of Cost and Performance, Proceedings of the Royal Society A, vol. 371, iss. 1983, 2013. (Funding Acknowledgements: NSF OCI-0910812, NSF OCI-0943725, NASA NCC5-626, and Amazon Educational Grant).
    [Bibtex]
    @article{berriman2013royal,
    author={G. Bruce Berriman and Gideon Juve and Jens-S. Vöckler and Ewa Deelman and Mats Rynge},
    url={http://rsta.royalsocietypublishing.org/content/371/1983/20120066.abstract},
    title={The Application of Cloud Computing to Scientific Workflows: A Study of Cost and Performance},
    journal={Proceedings of the Royal Society A},
    volume={371},
    number={1983},
    month={January},
    year={2013},
    note={Funding Acknowledgements: NSF OCI-0910812, NSF OCI-0943725, NASA NCC5-626, and Amazon Educational Grant}
    }
  • W. Chen, E. Deelman, and R. Sakellariou, Imbalance Optimization in Scientific Workflows, in International Conference on Supercomputing (ICS 2013), 2013. (Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812).
    [Bibtex]
    @inproceedings{chen2013imbalance,
    author={Weiwei Chen and Ewa Deelman and Rizos Sakellariou},
    title={Imbalance Optimization in Scientific Workflows},
    booktitle={International Conference on Supercomputing (ICS 2013)},
    year={2013},
    note={Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812}
    }
  • [PDF] W. Chen, R. Ferreira da Silva, E. Deelman, and R. Sakellariou, Balanced Task Clustering in Scientific Workflows, in 9th IEEE International Conference on e-Science (eScience 2013), 2013. (Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812).
    [Bibtex]
    @inproceedings{chen2013balanced,
    author={Weiwei Chen and Ferreira da Silva, Rafael and Ewa Deelman and Rizos Sakellariou},
    url={http://pegasus.isi.edu/publications/2013/chen-clustering-escience2013.pdf},
    title={Balanced Task Clustering in Scientific Workflows},
    booktitle={9th IEEE International Conference on e-Science (eScience 2013)},
    year={2013},
    note={Funding Acknowledgements: NSF IIS-0905032 and NSF FutureGrid 0910812}
    }
  • E. Deelman, G. Juve, M. Malawski, and J. Nabrzyski, Hosted Science: Managing Computational Workloads in the Cloud, Parallel Processing Letters, vol. 23, iss. 2, 2013. (Funding: NSF OCI-0943725 and OCI-1148515).
    [Bibtex]
    @article{deelman2013hosted,
    author={Ewa Deelman and Gideon Juve and Maciej Malawski and Jarek Nabrzyski},
    url={http://www.worldscientific.com/doi/pdf/10.1142/S0129626413400045},
    title={Hosted Science: Managing Computational Workloads in the Cloud},
    journal={Parallel Processing Letters},
    volume={23},
    number={2},
    month={June},
    year={2013},
    note={Funding: NSF OCI-0943725 and OCI-1148515}
    }
  • [PDF] R. Ferreira da Silva, G. Juve, E. Deelman, T. Glatard, F. Desprez, D. Thain, B. Tovar, and M. Livny, Toward Fine-Grained Online Task Characteristics Estimation in Scientific Workflows, in 8th Workshop On Workflows in Support of Large-Scale Science (WORKS), 2013. (Funding Acknowledgements: DOE contract for dv/dt ER26110, EC FP7 Program under grant agreement 312579 ER-flow).
    [Bibtex]
    @inproceedings{silva2013estimation,
    author={Ferreira da Silva, Rafael and Gideon Juve and Ewa Deelman and Tristan Glatard and Frederic Desprez and Douglas Thain and Benjamín Tovar and Miron Livny},
    url={http://pegasus.isi.edu/publications/2013/ferreira-da-silva-task-estimation-works2013.pdf},
    title={Toward Fine-Grained Online Task Characteristics Estimation in Scientific Workflows},
    booktitle={8th Workshop On Workflows in Support of Large-Scale Science (WORKS)},
    year={2013},
    note={Funding Acknowledgements: DOE contract for dv/dt ER26110, EC FP7 Program under grant agreement 312579 ER-flow}
    }
  • [PDF] G. Juve, M. Rynge, E. Deelman, J. Vöckler, and B. G. Berriman, Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific Workflows, Computing in Science and Engineering, vol. 15, iss. 4, pp. 20-29, 2013. (Funding: NSF OCI-0943725 and OCI-0910812, Amazon Web Services Educational Grant).).
    [Bibtex]
    @article{juve2013comparing,
    author={Gideon Juve and Mats Rynge and Ewa Deelman and Jens-S. Vöckler and G. Bruce Berriman},
    url={http://pegasus.isi.edu/publications/2013/JuveG-Comparing.pdf},
    title={Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific Workflows},
    journal={Computing in Science and Engineering},
    volume={15},
    number={4},
    pages={20-29},
    year={2013},
    note={Funding: NSF OCI-0943725 and OCI-0910812, Amazon Web Services Educational Grant).}
    }
  • [PDF] G. Juve, A. Chervenak, E. Deelman, S. Bharathi, G. Mehta, and K. Vahi, Characterizing and Profiling Scientific Workflows, Future Generation Computer Systems, vol. 29, iss. 3, pp. 682-692, 2013. .
    [Bibtex]
    @article{juve2013characterizing,
    author={Gideon Juve and Ann Chervenak and Ewa Deelman and Shishir Bharathi and Gaurang Mehta and Karan Vahi},
    url={http://pegasus.isi.edu/publications/2013/JuveG-Characterizing.pdf},
    title={Characterizing and Profiling Scientific Workflows},
    journal={Future Generation Computer Systems},
    volume={29},
    number={3},
    pages={682-692},
    month={March},
    year={2013}
    }
  • [PDF] A. Mandal, P. Ruth, I. Baldin, Y. Xin, C. Castillo, M. Rynge, and E. Deelman, Evaluating I/O Aware Network Management for Scientific Workflows on Networked Clouds, in The 3rd International Workshop on Network-aware Data Management, in conjunction with SC13, 2013. (Funding Acknowledgements: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872)).
    [Bibtex]
    @inproceedings{mandal2013io,
    author={Anirban Mandal and Paul Ruth and Ilya Baldin and Yufeng Xin and Claris Castillo and Mats Rynge and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2013/io-aware-network-management-ndm2013.pdf},
    title={Evaluating I/O Aware Network Management for Scientific Workflows on Networked Clouds},
    booktitle={The 3rd International Workshop on Network-aware Data Management, in conjunction with SC13},
    year={2013},
    note={Funding Acknowledgements: NSF CC-NIE ADAMANT project (NSF ACI 1245926), DoE DROPS project (ASCR DE-SC0005286), DoE SciDAC SUPER project (DE-FG02-11ER26050/DE-SC0006925), NSF SDCI Missing Link project (NSF ACI 1032573), and the NSF GENI project (GENI Project Office Award #1872)}
    }
  • [PDF] M. McLennan, S. Clark, F. McKenna, E. Deelman, M. Rynge, K. Vahi, D. Kearney, and C. Song, Bringing Scientific Workflow to the Masses via Pegasus and HUBzero, in Proceedings of the 5th International Workshop on Science Gateways, 2013. (Funding Acknowledgements: NSF grants CBET-0941302, CMMI-0927178, OCI-1148515, and OCI-0943705).
    [Bibtex]
    @inproceedings{mclennan2013masses,
    author={Michael McLennan and Steve Clark and Frank McKenna and Ewa Deelman and Mats Rynge and Karan Vahi and Derrick Kearney and Carol Song},
    url={http://pegasus.isi.edu/publications/2013/McLennan_Pegasus_Hubzero.pdf},
    title={Bringing Scientific Workflow to the Masses via Pegasus and HUBzero},
    booktitle={Proceedings of the 5th International Workshop on Science Gateways},
    year={2013},
    note={Funding Acknowledgements: NSF grants CBET-0941302, CMMI-0927178, OCI-1148515, and OCI-0943705}
    }
  • [PDF] I. Pietri, M. Malawski, G. Juve, E. Deelman, J. Nabrzyski, and R. Sakellariou, Energy-Constrained Provisioning for Scientific Workflow Ensembles, in IEEE International Conference on Cloud and Green Computing (CGC13), 2013. .
    [Bibtex]
    @inproceedings{pietri2013energy,
    author={Ilia Pietri and Maciej Malawski and Gideon Juve and Ewa Deelman and Jarek Nabrzyski and Rizos Sakellariou},
    url={http://pegasus.isi.edu/publications/2013/PietriI-Energy.pdf},
    title={Energy-Constrained Provisioning for Scientific Workflow Ensembles},
    booktitle={IEEE International Conference on Cloud and Green Computing (CGC13)},
    year={2013}
    }
  • [PDF] M. Rynge, G. Juve, J. Kinney, J. Good, B. G. Berriman, A. Merrihew, and E. Deelman, Producing an Infrared Multiwavelength Galactic Plane Atlas using Montage, Pegasus and Amazon Web Services, in 23rd Annual Astronomical Data Analysis Software and Systems (ADASS) Conference, 2013. (Funding Acknowledgments: OCI SI2-SSI program grant #1148515).
    [Bibtex]
    @inproceedings{rynge2013adass,
    author={Mats Rynge and Gideon Juve and Jamie Kinney and John Good and G. Bruce Berriman and Ann Merrihew and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2013/rynge-montage-pegasus-amazon-adass2013.pdf},
    title={Producing an Infrared Multiwavelength Galactic Plane Atlas using Montage, Pegasus and Amazon Web Services},
    booktitle={23rd Annual Astronomical Data Analysis Software and Systems (ADASS) Conference},
    year={2013},
    note={Funding Acknowledgments: OCI SI2-SSI program grant #1148515}
    }
  • [PDF] K. Vahi, M. Rynge, G. Juve, R. Mayani, and E. Deelman, Rethinking Data Management for Big Data Scientific Workflows, in Workshop on Big Data and Science: Infrastructure and Services, 2013. (Funding Acknowledgments: OCI SDCI program grant #0722019 and OCI SI2-SSI program grant #1148515).
    [Bibtex]
    @inproceedings{vahi2013rethinking,
    author={Karan Vahi and Mats Rynge and Gideon Juve and Rajiv Mayani and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2013/Vahi-PegasusLite-IEEE-BigData-2013.pdf},
    title={Rethinking Data Management for Big Data Scientific Workflows},
    booktitle={Workshop on Big Data and Science: Infrastructure and Services},
    year={2013},
    note={Funding Acknowledgments: OCI SDCI program grant #0722019 and OCI SI2-SSI program grant #1148515}
    }
  • K. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. Mehta, and E. D. andrew Jones, A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows, Journal of Grid Computing, vol. 11, iss. 3, pp. 381-406, 2013. (Funding Acknowledgements: NSF grant OCI-0943705).
    [Bibtex]
    @article{vahi2013jgc,
    author={Karan Vahi and Ian Harvey and Taghrid Samak and Daniel Gunter and Kieran Evans and David Rogers and Ian Taylor and Monte Goode and Fabio Silva and Eddie Al-Shakarchi and Gaurang Mehta and Ewa Deelman andrew Jones},
    url={http://link.springer.com/article/10.1007%2Fs10723-013-9265-4},
    title={A Case Study into Using Common Real-Time Workflow Monitoring Infrastructure for Scientific Workflows},
    journal={Journal of Grid Computing},
    volume={11},
    number={3},
    pages={381-406},
    year={2013},
    note={Funding Acknowledgements: NSF grant OCI-0943705}
    }

2012

  • [PDF] R. Agarwal, G. Juve, and E. Deelman, Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2, in 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12), 2012. (Funding Acknowledgement: NSF OCI-0943725, Viterbi-India Program)).
    [Bibtex]
    @inproceedings{agarwal2012p2p,
    author={Rohit Agarwal and Gideon Juve and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/Agarwal-WORKS-2012.pdf},
    title={Peer-to-Peer Data Sharing for Scientific Workflows on Amazon EC2},
    booktitle={7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)},
    year={2012},
    note={Funding Acknowledgement: NSF OCI-0943725, Viterbi-India Program) }
    }
  • B. G. Berriman, C. Brinkworth, D. Gelino, D. K. Wittman, E. Deelman, G. Juve, M. Rynge, and J. Kinney, A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud, in Astronomical Data Analysis Software and Systems XXII, 2012. .
    [Bibtex]
    @inproceedings{berriman2012sagan,
    author={G. Bruce Berriman and Carolyn Brinkworth and Dawn Gelino and Dennis K. Wittman and Ewa Deelman and Gideon Juve and Mats Rynge and Jamie Kinney},
    title={A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud},
    booktitle={Astronomical Data Analysis Software and Systems XXII},
    year={2012}
    }
  • [PDF] W. Chen and E. Deelman, Integration of Workflow Partitioning and Resource Provisioning, in The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium, 2012. (Funding Acknowledgement: NSF IIS-0905032)).
    [Bibtex]
    @inproceedings{chen2012partitioning,
    author={Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/WChen-Integration-CCGrid12.pdf},
    title={Integration of Workflow Partitioning and Resource Provisioning},
    booktitle={The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Doctoral Symposium},
    year={2012},
    note={Funding Acknowledgement: NSF IIS-0905032) }
    }
  • [PDF] W. Chen and E. Deelman, Fault Tolerant Clustering in Scientific Workflows, in IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in conjunction with IEEE 8th World Congress on Services (SERVICES 2012), 2012. (Funding Acknowledgement: NSF IIS-0905032).
    [Bibtex]
    @inproceedings{chen2012tolerant,
    author={Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/WChen-FTC-Services12.pdf},
    title={Fault Tolerant Clustering in Scientific Workflows},
    booktitle={IEEE 6th International Workshop on Scientific Workflows (SWF 2012) in conjunction with IEEE 8th World Congress on Services (SERVICES 2012)},
    year={2012},
    note={Funding Acknowledgement: NSF IIS-0905032}
    }
  • [PDF] W. Chen and E. Deelman, WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed Environments, in The 8th IEEE International Conference on eScience 2012 (eScience 2012), 2012. (Funding Acknowledgement: NSF IIS-0905032).
    [Bibtex]
    @inproceedings{chen2012workflowsim,
    author={Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/WChen-WorkflowSim-eScience12.pdf},
    title={WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed Environments},
    booktitle={The 8th IEEE International Conference on eScience 2012 (eScience 2012)},
    year={2012},
    note={Funding Acknowledgement: NSF IIS-0905032}
    }
  • [PDF] A. L. Chervenak, D. E. Smith, W. Chen, and E. Deelman, Integrating Policy with Scientific Workflow Management for Data-Intensive Applications, in The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12), 2012. (Funding Acknowledgement: NSF IIS-0905032 and FutureGrid 0910812).
    [Bibtex]
    @inproceedings{chervenak2012policy,
    author={Ann L. Chervenak and David E. Smith and Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/WChen-PDPS-WORKS12.pdf},
    title={Integrating Policy with Scientific Workflow Management for Data-Intensive Applications},
    booktitle={The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)},
    year={2012},
    note={Funding Acknowledgement: NSF IIS-0905032 and FutureGrid 0910812}
    }
  • [PDF] E. Deelman, G. Juve, and B. G. Berriman, Using Clouds for Science, Is it Just Kicking the Can Down The Road?, in 2nd International Conference on Cloud Computing and Services Science (CLOSER 2012), 2012. (Funding Acknowledgements: NSF OCI-0943725).
    [Bibtex]
    @inproceedings{deelman2012kicking,
    author={Ewa Deelman and Gideon Juve and G. Bruce Berriman},
    url={http://pegasus.isi.edu/publications/2012/Deelman-CLOSER-2012.pdf},
    title={Using Clouds for Science, Is it Just Kicking the Can Down The Road?},
    booktitle={2nd International Conference on Cloud Computing and Services Science (CLOSER 2012)},
    year={2012},
    note={Funding Acknowledgements: NSF OCI-0943725}
    }
  • [PDF] G. Juve, E. Deelman, B. G. Berriman, B. P. Berman, and P. J. Maechling, An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2, Journal of Grid Computing, vol. 10, iss. 1, pp. 5-21, 2012. (Funding Acknowledgements: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626).
    [Bibtex]
    @article{juve2012jgc,
    author={Gideon Juve and Ewa Deelman and G. Bruce Berriman and Benjamin P. Berman and Philip J. Maechling},
    url={http://pegasus.isi.edu/publications/2012/Juve-JGC-2012.pdf},
    title={An Evaluation of the Cost and Performance of Scientific Workflows on Amazon EC2},
    journal={Journal of Grid Computing},
    volume={10},
    number={1},
    pages={5-21},
    year={2012},
    note={Funding Acknowledgements: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626}
    }
  • [PDF] M. Malawski, G. Juve, E. Deelman, and J. Nabrzyski, Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds, in 24th IEEE/ACM International Conference on Supercomputing (SC12), 2012. (Funding Acknowledgements: NSF OCI-0943725).
    [Bibtex]
    @inproceedings{malawski2012provisioning,
    author={Maciej Malawski and Gideon Juve and Ewa Deelman and Jarek Nabrzyski},
    url={http://pegasus.isi.edu/publications/2012/Malawski-Ensemble.pdf},
    title={Cost- and Deadline-Constrained Provisioning for Scientific Workflow Ensembles in IaaS Clouds},
    booktitle={24th IEEE/ACM International Conference on Supercomputing (SC12)},
    year={2012},
    note={Funding Acknowledgements: NSF OCI-0943725}
    }
  • [PDF] M. Rynge, G. Juve, K. Vahi, S. Callaghan, G. Mehta, P. J. Maechling, and E. Deelman, Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker, in XSEDE12, 2012. (Funding acknowledgements: NSF OCI-0722019, NSF OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF OCI-1053575).
    [Bibtex]
    @inproceedings{rynge2012pmc,
    author={Mats Rynge and Gideon Juve and Karan Vahi and Scott Callaghan and Gaurang Mehta and Philip J. Maechling and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/XSEDE12-Rynge-pegasus-mpi-cluster.pdf},
    title={Enabling Large-scale Scientific Workflows on Petascale Resources Using MPI Master/Worker},
    booktitle={XSEDE12},
    year={2012},
    note={Funding acknowledgements: NSF OCI-0722019, NSF OCI-0943725, NSF EAR-0529922, USGS 07HQAG0008, NSF OCI-1053575}
    }
  • T. Samak, D. Gunter, M. Goode, E. Deelman, G. Juve, and F. Silva, Failure Analysis of Distributed Scientific Workflows Executing in the Cloud, in 8th International Conference on Network and Service Management (CNSM 2012), 2012. (Funding Acknowledgements: DOE DE-AC02-05CH11231 and NSF OCI-0943705)).
    [Bibtex]
    @inproceedings{samak2012failure,
    author={Taghrid Samak and Dan Gunter and Monte Goode and Ewa Deelman and Gideon Juve and Fabio Silva},
    title={Failure Analysis of Distributed Scientific Workflows Executing in the Cloud},
    booktitle={8th International Conference on Network and Service Management (CNSM 2012)},
    year={2012},
    note={Funding Acknowledgements: DOE DE-AC02-05CH11231 and NSF OCI-0943705) }
    }
  • [PDF] K. Vahi, I. Harvey, T. Samak, D. Gunter, K. Evans, D. Rogers, I. Taylor, M. Goode, F. Silva, E. Al-Shakarchi, G. M. andrew Jones, and E. Deelman, A General Approach to Real-time Workflow Monitoring, in The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12), 2012. (Funding Acknowledgement: NSF OCI-0943705)).
    [Bibtex]
    @inproceedings{vahi2012monitoring,
    author={Karan Vahi and Ian Harvey and Taghrid Samak and Dan Gunter and Kieran Evans and David Rogers and Ian Taylor and Monte Goode and Fabio Silva and Eddie Al-Shakarchi and Gaurang Mehta andrew Jones and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2012/Vahi-Stampede-WORKS-2012.pdf},
    title={A General Approach to Real-time Workflow Monitoring},
    booktitle={The 7th Workshop on Workflows in Support of Large-Scale Science (WORKS12)},
    year={2012},
    note={Funding Acknowledgement: NSF OCI-0943705) }
    }

2011

  • B. G. Berriman, J. Good, E. Deelman, and A. Alexov, Ten years of software sustainability at the Infrared Processing and Analysis Center, Phil. Trans. R. Soc. A, vol. 369, pp. 3384-3397, 2011. .
    [Bibtex]
    @article{berriman2011tenyears,
    author={G. Bruce Berriman and John Good and Ewa Deelman and Anastasia Alexov},
    title={Ten years of software sustainability at the Infrared Processing and Analysis Center},
    journal={Phil. Trans. R. Soc. A},
    volume={369},
    pages={3384-3397},
    year={2011},
    url={http://doi.org/10.1098/rsta.2011.0136}
    }
  • E. Byun, Y. Kee, J. Kim, E. Deelman, and S. Maeng, BTS: Resource Capacity Estimate for Time-targeted Science Workflows, Journal of Parallel and Distributed Computing: Special Issue on Cloud Computing, vol. 71, iss. 6, pp. 848-862, 2011. .
    [Bibtex]
    @article{byun2011bts,
    author={Eun-Kyu Byun and Yang-Suk Kee and Jin-Soo Kim and Ewa Deelman and Seungryoul Maeng},
    url={http://www.sciencedirect.com/science/article/pii/S0743731511000207},
    title={BTS: Resource Capacity Estimate for Time-targeted Science Workflows},
    journal={Journal of Parallel and Distributed Computing: Special Issue on Cloud Computing},
    volume={71},
    number={6},
    pages={848-862},
    month={June},
    year={2011}
    }
  • S. Callaghan, P. Maechling, P. Small, K. Milner, G. Juve, T. H. Jordan, E. Deelman, G. Mehta, K. Vahi, D. Gunter, and K. Beattie, Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science Application, International Journal of High Performance Computing Applications, vol. 25, iss. 3, pp. 274-285, 2011. (Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS 02HQAG0008)).
    [Bibtex]
    @article{callaghan2011metrics,
    author={Scott Callaghan and Philip Maechling and Patrick Small and Kevin Milner and Gideon Juve and Thomas H. Jordan and Ewa Deelman and Gaurang Mehta and Karan Vahi and Dan Gunter and Keith Beattie},
    title={Metrics for Heterogeneous Scientific Workflows: A Case Study of an Earthquake Science Application},
    journal={International Journal of High Performance Computing Applications},
    volume={25},
    number={3},
    pages={274-285},
    month={August},
    year={2011},
    note={Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, NSF OCI-0749313, NSF EAR-0106924 and USGS 02HQAG0008) }
    }
  • [PDF] W. Chen and E. Deelman, Partitioning and Scheduling Workflows across Multiple Sites with Storage Constraints, in 9th International Conference on Parallel Processing and Applied Mathmatics, 2011. (Funding Acknowledgements: NSF IIS-0905032).
    [Bibtex]
    @inproceedings{chen2011constraints,
    author={Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2011/WChen-Partitioning_and_Scheduling.pdf},
    title={Partitioning and Scheduling Workflows across Multiple Sites with Storage Constraints},
    booktitle={9th International Conference on Parallel Processing and Applied Mathmatics},
    year={2011},
    note={Funding Acknowledgements: NSF IIS-0905032}
    }
  • [PDF] W. Chen and E. Deelman, Workflow Overhead Analysis and Optimizations, in 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), 2011. (Funding Acknowledgements: NSF IIS-0905032).
    [Bibtex]
    @inproceedings{chen2011overhead,
    author={Weiwei Chen and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2011/WChen-Workflow_Overhead_Analysis_and_Optimizations.pdf},
    title={Workflow Overhead Analysis and Optimizations},
    booktitle={6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11)},
    year={2011},
    note={Funding Acknowledgements: NSF IIS-0905032}
    }
  • D. Gunter, E. Deelman, T. Samak, C. Brooks, M. Goode, G. Juve, G. Mehta, P. Moraes, F. Silva, M. Swany, and K. Vahi, Online Workflow Management and Performance Analysis with Stampede, in 7th International Conference on Network and Service Management (CNSM-2011), 2011. .
    [Bibtex]
    @inproceedings{gunter2011online,
    author={Dan Gunter and Ewa Deelman and Taghrid Samak and Christopher Brooks and Monte Goode and Gideon Juve and Gaurang Mehta and Priscilla Moraes and Fabio Silva and Martin Swany and Karan Vahi},
    title={Online Workflow Management and Performance Analysis with Stampede},
    booktitle={7th International Conference on Network and Service Management (CNSM-2011)},
    year={2011}
    }
  • G. Juve and E. Deelman, Wrangler: Virtual Cluster Provisioning for the Cloud, in Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11), 2011. (Funding Acknowledgements: NSF OCI-0943725).
    [Bibtex]
    @inproceedings{juve2011wrangler,
    author={Gideon Juve and Ewa Deelman},
    title={Wrangler: Virtual Cluster Provisioning for the Cloud},
    booktitle={Proceedings of the 20th International Symposium on High Performance Distributed Computing (HPDC11)},
    year={2011},
    note={Funding Acknowledgements: NSF OCI-0943725}
    }
  • G. Juve and E. Deelman, Automating Application Deployment in Infrastructure Clouds, in 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011), 2011. (Funding Acknowlegements: DOE, NSF OCI-0943725, and NSF OCI-091812).
    [Bibtex]
    @inproceedings{juve2011automate,
    author={Gideon Juve and Ewa Deelman},
    title={Automating Application Deployment in Infrastructure Clouds},
    booktitle={3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom 2011)},
    year={2011},
    note={Funding Acknowlegements: DOE, NSF OCI-0943725, and NSF OCI-091812}
    }
  • G. Mehta, E. Deelman, J. A. Knowles, T. Chen, Y. Wang, J. Vöckler, S. Buyske, and T. Matise, Enabling Data and Compute Intensive Workflows in Bioinformatics, in 2nd International Workshop onHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in conjunction with Euro-Par Conference 2011, 2011. .
    [Bibtex]
    @inproceedings{mehta2011bio,
    author={Gaurang Mehta and Ewa Deelman and James A Knowles and Ting Chen and Ying Wang and Jens-S. Vöckler and Steven Buyske and Tara Matise},
    title={Enabling Data and Compute Intensive Workflows in Bioinformatics},
    booktitle={2nd International Workshop onHigh Performance Bioinformatics and Biomedicine (HiBB 2011) in conjunction with Euro-Par Conference 2011},
    year={2011}
    }
  • A. Nagavaram, G. Agrawal, M. Freitas, G. Mehta, R. Mayani, and E. Deelman, A Cloud‐based Dynamic Workflow for Mass Spectrometry Data Analysis, in Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), 2011. .
    [Bibtex]
    @inproceedings{nagavaram2011massspec,
    author={Ashish Nagavaram and Gagan Agrawal and Michael Freitas and Gaurang Mehta and Rajiv Mayani and Ewa Deelman},
    title={A Cloud‐based Dynamic Workflow for Mass Spectrometry Data Analysis},
    booktitle={Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011)},
    year={2011}
    }
  • M. Rynge, G. Juve, G. Mehta, E. Deelman, K. Larson, B. Holzman, I. Sfiligoi, F. Würthwein, B. G. Berriman, and S. Callaghan, Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures, in Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011), 2011. (Funding Acknowledgements: Open Science Grid, NSF OCI-0943725, and TeraGrid TG-CCR1000018)).
    [Bibtex]
    @inproceedings{rynge2011corralwms,
    author={Mats Rynge and Gideon Juve and Gaurang Mehta and Ewa Deelman and Krista Larson and Burt Holzman and Igor Sfiligoi and Frank Würthwein and G. Bruce Berriman and Scott Callaghan},
    title={Experiences Using GlideinWMS and the Corral Frontend Across Cyberinfrastructures},
    booktitle={Proceedings of the 7th IEEE International Conference on e-Science (e-Science 2011)},
    year={2011},
    note={Funding Acknowledgements: Open Science Grid, NSF OCI-0943725, and TeraGrid TG-CCR1000018) }
    }
  • T. Samak, D. Gunter, E. Deelman, G. Juve, G. Mehta, F. Silva, and K. Vahi, Online Fault and Anomaly Detection for Large-Scale Scientific Workflows, in 13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011), 2011. (Funding Acknowledgements: DOE DE-AC02-05CH11231, and NSF OCI-0943705).
    [Bibtex]
    @inproceedings{samak2011anomaly,
    author={Taghrid Samak and Dan Gunter and Ewa Deelman and Gideon Juve and Gaurang Mehta and Fabio Silva and Karan Vahi},
    title={Online Fault and Anomaly Detection for Large-Scale Scientific Workflows},
    booktitle={13th IEEE International Conference on High Performance Computing and Communications (HPCC-2011)},
    year={2011},
    note={Funding Acknowledgements: DOE DE-AC02-05CH11231, and NSF OCI-0943705}
    }
  • T. Samak, D. Gunter, M. Goode, E. Deelman, G. Mehta, F. Silva, and K. Vahi, Failure Prediction and Localization in Large Scientific Workflows, in 6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11), 2011. .
    [Bibtex]
    @inproceedings{samak2011failure,
    author={Taghrid Samak and Dan Gunter and Monte Goode and Ewa Deelman and Gaurang Mehta and Fabio Silva and Karan Vahi},
    title={Failure Prediction and Localization in Large Scientific Workflows},
    booktitle={6th Workshop on Workflows in Support of Large-Scale Science (WORKS 11)},
    year={2011}
    }
  • J. Vöckler, G. Juve, E. Deelman, M. Rynge, and B. G. Berriman, Experiences Using Cloud Computing for A Scientific Workflow Application, in Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011), 2011. (Funding Acknowledgements: NSF OCI-0910812).
    [Bibtex]
    @inproceedings{voeckler2011cloud,
    author={Jens-S. Vöckler and Gideon Juve and Ewa Deelman and Mats Rynge and G. Bruce Berriman},
    url={http://portal.acm.org/citation.cfm?id=1996109.1996114},
    title={Experiences Using Cloud Computing for A Scientific Workflow Application},
    booktitle={Proceedings of 2nd Workshop on Scientific Cloud Computing (ScienceCloud 2011)},
    year={2011},
    note={Funding Acknowledgements: NSF OCI-0910812}
    }
  • Y. Wang, G. Mehta, R. Mayani, J. Lu, T. Souaiaia, Y. C. andrew Clark, H. J. Yoon, L. Wan, O. V. Evgrafov, J. A. Knowles, E. Deelman, and T. Chen, RseqFlow: Workflows for RNA-Seq Data Analysis, Bioinformatics, vol. 27, iss. 18, pp. 2598-2600, 2011. .
    [Bibtex]
    @article{want2011rseq,
    author={Ying Wang and Gaurang Mehta and Rajiv Mayani and Jingxi Lu and Tade Souaiaia and Yangho Chen andrew Clark and Hee Jae Yoon and Lin Wan and Oleg V. Evgrafov and James A. Knowles and Ewa Deelman and Ting Chen},
    title={RseqFlow: Workflows for RNA-Seq Data Analysis},
    journal={Bioinformatics},
    volume={27},
    number={18},
    pages={2598-2600},
    year={2011},
    url={http://doi.org/10.1093/bioinformatics/btr441}
    }

2010

  • [PDF] B. G. Berriman, E. Deelman, P. Groth, and G. Juve, The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance, in SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy, 2010. .
    [Bibtex]
    @inproceedings{berriman2010provenance,
    author={G. Bruce Berriman and Ewa Deelman and Paul Groth and Gideon Juve},
    url={http://pegasus.isi.edu/publications/2010/BerrimanB-ApplicationCloud.pdf},
    title={The Application of Cloud Computing to the Creation of Image Mosaics and Management of Their Provenance},
    booktitle={SPIE Conference 7740: Software and Cyberinfrastructure for Astronomy},
    year={2010}
    }
  • B. G. Berriman, G. Juve, E. Deelman, M. Regelson, and P. Plavchan, The Application of Cloud Computing to Astronomy: A Study of Cost and Performance, in In Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010), 2010. (Funding Acknowledgements: NSF OCI-0438712, and NSF CCF-0725332).
    [Bibtex]
    @inproceedings{berriman2010application,
    author={G. Bruce Berriman and Gideon Juve and Ewa Deelman and Moira Regelson and Peter Plavchan},
    title={The Application of Cloud Computing to Astronomy: A Study of Cost and Performance},
    booktitle={In Workshop on e-Science challenges in Astronomy and Astrophysics in conjunction with the 6th IEEE International Conference on e-Science (e-Science 2010)},
    year={2010},
    note={Funding Acknowledgements: NSF OCI-0438712, and NSF CCF-0725332}
    }
  • R. Bolze and E. Deelman, Exploiting the Cloud of Computing Environments: An Application’s Perspective, in Cloud Computing and Software Services: Theory and Techniques, S. A. Ahson and M. Ilyas, Eds., CRC Press, 2010. .
    [Bibtex]
    @inbook{bolze2010exploiting,
    author={Raphael Bolze and Ewa Deelman},
    title={Exploiting the Cloud of Computing Environments: An Application's Perspective},
    booktitle={Cloud Computing and Software Services: Theory and Techniques},
    editor={Syed A. Ahson and Mohammad Ilyas},
    publisher={CRC Press},
    year={2010}
    }
  • [PDF] S. Callaghan, E. Deelman, D. Gunter, G. Juve, P. Maechling, C. Brooks, K. Vahi, K. Milner, R. Graves, E. Field, D. Okaya, and T. Jordan, Scaling up Workflow-based Applications, Journal of Computer and System Sciences, vol. 76, iss. 6, pp. 428-446, 2010. (Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, and NSF OCI-0749313).
    [Bibtex]
    @article{callaghan2010scalingup,
    author={Scott Callaghan and Ewa Deelman and Dan Gunter and Gideon Juve and Philip Maechling and Christopher Brooks and Karan Vahi and Kevin Milner and Robert Graves and Edward Field and David Okaya and Thomas Jordan},
    url={http://pegasus.isi.edu/publications/2010/CallaghanS-ScalingUp.pdf},
    title={Scaling up Workflow-based Applications},
    journal={Journal of Computer and System Sciences},
    volume={76},
    number={6},
    pages={428-446},
    month={September},
    year={2010},
    note={Funding Acknowledgements: TeraGrid TG-MCA03S012, NSF OCI-0722019, and NSF OCI-0749313}
    }
  • Y. Gil, V. Ratnakar, and E. D. et al, Wings: Intelligent Workflow-Based Design of Computational Experiments, IEEE Intelligent Systems, 2010. .
    [Bibtex]
    @article{gil2010wings,
    author={Yolanda Gil and Varun Ratnakar and Ewa Deelman et al},
    url={http://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=5396300},
    title={Wings: Intelligent Workflow-Based Design of Computational Experiments},
    journal={IEEE Intelligent Systems},
    month={January},
    year={2010}
    }
  • [PDF] R. Graves, T. Jordan, S. Callaghan, E. Deelman, E. Field, G. Juve, C. Kesselman, P. Maechling, G. Mehta, K. Milner, D. Okaya, P. Small, and K. Vahi, CyberShake: A Physics-Based Seismic Hazard Model for Southern California, Pure and Applied Geophysics, 2010. (Funding Acknowledgements: NSF OCI-0438712, NSF CCF-0725332).
    [Bibtex]
    @article{graves2010cybershake,
    author={Robert Graves and Thomas Jordan and Scott Callaghan and Ewa Deelman and Edward Field and Gideon Juve and Carl Kesselman and Philip Maechling and Gaurang Mehta and Kevin Milner and David Okaya and Patrick Small and Karan Vahi},
    url={http://pegasus.isi.edu/publications/2010/GravesR-CyberShake.pdf},
    title={CyberShake: A Physics-Based Seismic Hazard Model for Southern California},
    journal={Pure and Applied Geophysics},
    month={May},
    year={2010},
    note={Funding Acknowledgements: NSF OCI-0438712, NSF CCF-0725332}
    }
  • G. Juve and E. Deelman, Scientific Workflows in the Cloud, in Grids, Clouds and Virtualization, M. Cafaro and G. Aloisio, Eds., Springer, 2010, pp. 71-91. .
    [Bibtex]
    @inbook{juve2010cloudchapter,
    author={Gideon Juve and Ewa Deelman},
    booktitle={Grids, Clouds and Virtualization},
    editor={M. Cafaro and G. Aloisio},
    title={Scientific Workflows in the Cloud},
    publisher={Springer},
    pages={71--91},
    year={2010}
    }
  • G. Juve and E. Deelman, Scientific Workflows and Clouds, ACM Crossroads, vol. 16, iss. 3, pp. 14-18, 2010. .
    [Bibtex]
    @article{juve2010xrds,
    author={Gideon Juve and Ewa Deelman},
    title={Scientific Workflows and Clouds},
    journal={ACM Crossroads},
    volume={16},
    number={3},
    pages={14-18},
    year={2010}
    }
  • [PDF] G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, and P. J. Maechling, Data Sharing Options for Scientific Workflows on Amazon EC2, in 22nd IEEE/ACM Conference on Supercomputing (SC10), 2010. (Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626).
    [Bibtex]
    @inproceedings{juve2010sc,
    author={Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang Mehta and Bruce Berriman and Benjamin P. Berman and Philip J. Maechling},
    url={http://pegasus.isi.edu/publications/2010/JuveG-DataSharing.pdf},
    title={Data Sharing Options for Scientific Workflows on Amazon EC2},
    booktitle={22nd IEEE/ACM Conference on Supercomputing (SC10)},
    year={2010},
    note={Funding Acknowledgments: NSF CCF-0725332, NSF OCI-0722019, and NASA NCC5-626}
    }
  • G. Juve, E. Deelman, K. Vahi, and G. Mehta, Experiences with Resource Provisioning for Scientific Workflows Using Corral, Scientific Programming, vol. 18, iss. 2, pp. 77-92, 2010. (Funding Acknowledgements: NSF OCI-0943725 and NSF OCI-0749313).
    [Bibtex]
    @article{juve2010corral,
    author={Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang Mehta},
    title={Experiences with Resource Provisioning for Scientific Workflows Using Corral},
    journal={Scientific Programming},
    volume={18},
    number={2},
    pages={77-92},
    month={April},
    year={2010},
    note={Funding Acknowledgements: NSF OCI-0943725 and NSF OCI-0749313}
    }
  • [PDF] V. S. Kumar, T. Kurc, V. Ratnakar, J. Kim, G. Mehta, K. Vahi, Y. L. Nelson, P. Sadayappan, E. Deelman, Y. Gil, M. Hall, and J. Saltz, Parameterized Specification, Configuration and Execution of Data-intensive Scientific Workflows, Cluster Computing Journal, vol. 13, iss. 3, pp. 315-333, 2010. .
    [Bibtex]
    @article{kumar2010ccj,
    author={Vijay S. Kumar and Tahsin Kurc and Varun Ratnakar and Jihie Kim and Gaurang Mehta and Karan Vahi and Yoonju Lee Nelson and P. Sadayappan and Ewa Deelman and Yolanda Gil and Mary Hall and Joel Saltz},
    url={http://pegasus.isi.edu/publications/2010/Cluster-Computing-2010.pdf},
    title={Parameterized Specification, Configuration and Execution of Data-intensive Scientific Workflows},
    journal={Cluster Computing Journal},
    volume={13},
    number={3},
    pages={315-333},
    year={2010}
    }
  • R. Sakellariou, H. Zhao, and E. Deelman, Mapping Workflows on Grid Resources: Experiments with the Montage Workflow, in Grids, P2P and Services Computing, Springer, 2010, pp. 119-132. .
    [Bibtex]
    @inbook{sakellariou2010mapping,
    author={Rizos Sakellariou and Henan Zhao and Ewa Deelman},
    title={Mapping Workflows on Grid Resources: Experiments with the Montage Workflow},
    booktitle={Grids, P2P and Services Computing},
    publisher={Springer},
    year={2010},
    pages={119-132}
    }
  • [PDF] M. Sonntag, D. Karastoyanova, and E. Deelman, Bridging The Gap Between Business And Scientific Workflows, in e-Science 2010, 2010. .
    [Bibtex]
    @inproceedings{sonntag2010bridging,
    author={Mirko Sonntag and Dimka Karastoyanova and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2010/Bridging_The_Gap_Between_Business_And_Scientific_Workflows.pdf},
    title={Bridging The Gap Between Business And Scientific Workflows},
    booktitle={e-Science 2010},
    year={2010}
    }
  • [PDF] M. Sonntag, D. Karastoyanova, and E. Deelman, BPEL4Pegasus: Combining Business and Scientific Workflows, in International Conference on Service-Oriented Computing (ICSOC), 2010. .
    [Bibtex]
    @inproceedings{sonntag2010bpel,
    author={Mirko Sonntag and Dimka Karastoyanova and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2010/100907-BPEL4Pegasus-camera-ready.pdf},
    title={BPEL4Pegasus: Combining Business and Scientific Workflows},
    booktitle={International Conference on Service-Oriented Computing (ICSOC)},
    year={2010}
    }

2009

  • [PDF] E. Deelman, Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed Environments, International Journal of High Performance Computing Applications, 2009. .
    [Bibtex]
    @article{deelman2009gridcloud,
    author={Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2009/Deelman-GridAndClouds.pdf},
    title={Grids and Clouds: Making Workflow Applications Work in Heterogeneous Distributed Environments},
    journal={International Journal of High Performance Computing Applications},
    year={2009}
    }
  • [PDF] P. Groth, E. Deelman, G. Juve, G. Mehta, and B. Berriman, Pipeline-Centric Provenance Model, in 4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09), 2009. .
    [Bibtex]
    @inproceedings{groth2009pipeline,
    author={Paul Groth and Ewa Deelman and Gideon Juve and Gaurang Mehta and Bruce Berriman},
    url={http://pegasus.isi.edu/publications/2009/GrothP-PipelineCentric.pdf},
    title={Pipeline-Centric Provenance Model},
    booktitle={4th Workshop on Workflows in Support of Large-Scale Science (WORKS 09)},
    year={2009}
    }
  • [PDF] G. Juve, E. Deelman, K. Vahi, G. Mehta, B. Berriman, B. P. Berman, and P. J. Maechling, Scientific Workflow Applications on Amazon EC2, in Workshop on Cloud-based Services and Applications, 2009. .
    [Bibtex]
    @inproceedings{juve2009ec2,
    author={Gideon Juve and Ewa Deelman and Karan Vahi and Gaurang Mehta and Bruce Berriman and Benjamin P. Berman and Philip J. Maechling},
    url={http://pegasus.isi.edu/publications/2009/JuveG-EC2.pdf},
    title={Scientific Workflow Applications on Amazon EC2},
    booktitle={Workshop on Cloud-based Services and Applications},
    year={2009}
    }
  • [PDF] V. S. Kumar, P. Sadayappan, G. Mehta, K. Vahi, E. Deelman, V. Ratnakar, J. Kim, Y. Gil, M. W. Hall, T. M. Kurç, and J. H. Saltz, An Integrated Framework for Performance-based Optimization of Scientific Workflows, in Conference on High Performance and Distributed Computing (HPDC), 2009. .
    [Bibtex]
    @inproceedings{kumar2009optimization,
    author={Vijay S. Kumar and P. Sadayappan and Gaurang Mehta and Karan Vahi and Ewa Deelman and Varun Ratnakar and Jihie Kim and Yolanda Gil and Mary W. Hall and Tahsin M. Kurç and Joel H. Saltz},
    url={http://pegasus.isi.edu/publications/2009/hpdc153-kumar.pdf},
    title={An Integrated Framework for Performance-based Optimization of Scientific Workflows},
    booktitle={Conference on High Performance and Distributed Computing (HPDC)},
    year={2009}
    }
  • [PDF] K. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, and G. Mehta, Adaptive Workflow Processing and Execution in Pegasus, Concurrency and Computation: Practice and Experience, vol. 21, iss. 16, pp. 1965-1981, 2009. .
    [Bibtex]
    @article{lee2009adaptive,
    author={Kevin Lee and Norman W. Paton and Rizos Sakellariou and Ewa Deelman and Alvaro A. A. Fernandes and Gaurang Mehta},
    url={http://pegasus.isi.edu/publications/2009/CCPE-2009.pdf},
    title={Adaptive Workflow Processing and Execution in Pegasus},
    journal={Concurrency and Computation: Practice and Experience},
    volume={21},
    number={16},
    pages={1965-1981},
    year={2009}
    }
  • [PDF] R. Sakellariou, H. Zhao, and E. Deelman, Mapping Workflows on Grid Resources: Experiments with the Montage Workflow, in CoreGrid, 2009. .
    [Bibtex]
    @inproceedings{sakellariou2009coregrid,
    author={Rizos Sakellariou and Henan Zhao and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2009/coregrid09.pdf},
    title={Mapping Workflows on Grid Resources: Experiments with the Montage Workflow},
    booktitle={CoreGrid},
    year={2009}
    }

2008

  • [PDF] S. Bharathi, A. Chervenak, E. Deelman, G. Mehta, M. Su, and K. Vahi, Characterization of Scientific Workflows, in 3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08), 2008. .
    [Bibtex]
    @inproceedings{bharathi2008characterization,
    author={Shishir Bharathi and Ann Chervenak and Ewa Deelman and Gaurang Mehta and Mei-Hui Su and Karan Vahi},
    url={http://pegasus.isi.edu/publications/2008/bharathi-works08.pdf},
    title={Characterization of Scientific Workflows},
    booktitle={3rd Workshop on Workflows in Support of Large-Scale Science (WORKS08)},
    year={2008}
    }
  • [PDF] S. Callaghan, P. Maechling, E. Deelman, K. Vahi, G. Mehta, G. Juve, K. Milner, R. Graves, E. Field, D. Okaya, D. Gunter, K. Beattie, and T. Jordan, Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows – Experiences from SCEC CyberShake, in Fourth IEEE International Conference on e-Science (e-Science 2008), 2008. .
    [Bibtex]
    @inproceedings{callaghan2009reducing,
    author={Scott Callaghan and Philip Maechling and Ewa Deelman and Karan Vahi and Gaurang Mehta and Gideon Juve and Kevin Milner and Robert Graves and Edward Field and David Okaya and Dan Gunter and Keith Beattie and Thomas Jordan},
    url={http://pegasus.isi.edu/publications/2008/CallaghanS-MegaWorkflowsCyberShake.pdf},
    title={Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake},
    booktitle={Fourth IEEE International Conference on e-Science (e-Science 2008)},
    year={2008}
    }
  • [PDF] E. Deelman and A. Chervenak, Data Management Challenges of Data-Intensive Scientific Workflows, in 3rd International Workshop on Workflow Systems in e-Science (WSES 08), in conjunction with CCGrid 2008, 2008. .
    [Bibtex]
    @inproceedings{deelman2008challenges,
    author={Ewa Deelman and Ann Chervenak},
    url={http://pegasus.isi.edu/publications/2008/wses2008.pdf},
    title={Data Management Challenges of Data-Intensive Scientific Workflows},
    booktitle={3rd International Workshop on Workflow Systems in e-Science (WSES 08), in conjunction with CCGrid 2008},
    year={2008}
    }
  • [PDF] E. Deelman, G. Singh, M. Livny, B. Berriman, and J. Good, The Cost of Doing Science on the Cloud: The Montage Example, in Supercomputing 2008, 2008. .
    [Bibtex]
    @inproceedings{deelman2008cost,
    author={Ewa Deelman and Gurmeet Singh and Miron Livny and Bruce Berriman and John Good},
    url={http://pegasus.isi.edu/publications/2008/deelman_sc08_corrected.pdf},
    title={The Cost of Doing Science on the Cloud: The Montage Example},
    booktitle={Supercomputing 2008},
    year={2008}
    }
  • E. Deelman, D. Gannon, M. Shields, and I. Taylor, Workflows and e-Science: An Overview of Workflow System Features and Capabilities, Future Generation Computer Systems, 2008. .
    [Bibtex]
    @article{deelman2008fgcs,
    author={Ewa Deelman and Dennis Gannon and Matthew Shields and Ian Taylor},
    url={http://dx.doi.org/10.1016/j.future.2008.06.012},
    title={Workflows and e-Science: An Overview of Workflow System Features and Capabilities},
    journal={Future Generation Computer Systems},
    month={July},
    year={2008}
    }
  • [PDF] C. Hoffa, G. Mehta, T. Freeman, E. Deelman, K. Keahey, B. Berriman, and J. Good, On the Use of Cloud Computing for Scientific Workflows, in 3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 2008. .
    [Bibtex]
    @inproceedings{hoffa2008cloud,
    author={Christina Hoffa and Gaurang Mehta and Timothy Freeman and Ewa Deelman and Kate Keahey and Bruce Berriman and John Good},
    url={http://pegasus.isi.edu/publications/2008/Hoffa-CloudComputing.pdf},
    title={On the Use of Cloud Computing for Scientific Workflows},
    booktitle={3rd International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)},
    year={2008}
    }
  • [PDF] G. Juve and E. Deelman, Resource Provisioning Options for Large-Scale Scientific Workflows, in Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008), 2008. .
    [Bibtex]
    @inproceedings{juve2008provisioning,
    author={Gideon Juve and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/2008/JuveG-ResourceProvisioningOptions.pdf},
    title={Resource Provisioning Options for Large-Scale Scientific Workflows},
    booktitle={Third International Workshop on Scientific Workflows and Business Workflow Standards in e-Science (SWBES) in conjunction with Fourth IEEE International Conference on e-Science (e-Science 2008)},
    year={2008}
    }
  • [PDF] K. Lee, N. W. Paton, R. Sakellariou, E. Deelman, A. A. A. Fernandes, and G. Mehta, Adaptive Workflow Processing and Execution in Pegasus, in 3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08), 2008. .
    [Bibtex]
    @inproceedings{lee2008adaptive,
    author={Kevin Lee and Norman W. Paton and Rizos Sakellariou and Ewa Deelman and Alvaro A. A. Fernandes and Gaurang Mehta},
    url={http://pegasus.isi.edu/publications/2008/lee-pegasus-wage.pdf},
    title={Adaptive Workflow Processing and Execution in Pegasus},
    booktitle={3rd International Workshop on Workflow Management and Applications in Grid Environments (WaGe08)},
    year={2008}
    }
  • S. Miles, P. Groth, E. Deelman, K. Vahi, G. Mehta, and L. Moreau, Provenance: The Bridge Between Experiments and Data, Computing in Science and Engineering, vol. 10, iss. 3, pp. 38-46, 2008. .
    [Bibtex]
    @article{miles2008provenance,
    author={Simon Miles and Paul Groth and Ewa Deelman and Karan Vahi and Gaurang Mehta and Luc Moreau},
    url={http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=4488063},
    title={Provenance: The Bridge Between Experiments and Data},
    journal={Computing in Science and Engineering},
    volume={10},
    number={3},
    pages={38-46},
    month={May},
    year={2008}
    }
  • [PDF] G. Singh, M. Su, K. Vahi, E. Deelman, B. Berriman, J. Good, D. S. Katz, and G. Mehta, Workflow Task Clustering for Best Effort Systems with Pegasus, in Mardi Gras Conference, 2008. .
    [Bibtex]
    @inproceedings{singh2008clustering,
    author={Gurmeet Singh and Mei-Hui Su and Karan Vahi and Ewa Deelman and Bruce Berriman and John Good and Daniel S. Katz and Gaurang Mehta},
    url={http://pegasus.isi.edu/publications/2008/MardiGras_v3.pdf},
    title={Workflow Task Clustering for Best Effort Systems with Pegasus},
    booktitle={Mardi Gras Conference},
    year={2008}
    }

2007

  • B. G. Berriman, E. Deelman, J. Good, J. C. Jacob, D. S. Katz, A. C. Laity, T. A. Prince, G. Singh, and M. Su, Generating Complex Astronomy Workflows, in Workflows for e-Science, , 2007. .
    [Bibtex]
    @inbook{berriman2007complex,
    author={G. Bruce Berriman and Ewa Deelman and John Good and Joseph C. Jacob and Daniel S. Katz and Anastasia C. Laity and Thomas A. Prince and Gurmeet Singh and Mei-Hui Su},
    title={Generating Complex Astronomy Workflows},
    booktitle={Workflows for e-Science},
    year={2007}
    }
  • [PDF] A. Chervenak, E. Deelman, M. Livny, M. Su, R. Schuler, S. Bharathi, G. Mehta, and K. Vahi, Data Placement for Scientific Applications in Distributed Environments, in Proceedings of Grid Conference 2007, 2007. .
    [Bibtex]
    @inproceedings{chervenak2007placement,
    author={Ann Chervenak and Ewa Deelman and Miron Livny and Mei-Hui Su and Rob Schuler and Shishir Bharathi and Gaurang Mehta and Karan Vahi},
    url={http://pegasus.isi.edu/publications/grid2007.pdf},
    title={Data Placement for Scientific Applications in Distributed Environments},
    booktitle={Proceedings of Grid Conference 2007},
    year={2007}
    }
  • E. Deelman, G. Mehta, G. Singh, M. Su, and K. Vahi, Pegasus: Mapping Large-Scale Workflows to Distributed Resources, in Workflows for e-Science, , 2007. .
    [Bibtex]
    @inbook{deelman2007pegasusmapping,
    author={Ewa Deelman and Gaurang Mehta and Gurmeet Singh and Mei-Hui Su and Karan Vahi},
    title={Pegasus: Mapping Large-Scale Workflows to Distributed Resources},
    booktitle={Workflows for e-Science},
    year={2007}
    }
  • [PDF] Y. Gil, V. Ratnakar, E. Deelman, G. Mehta, and J. Kim, Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows, in Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI), 2007. .
    [Bibtex]
    @inproceedings{gil2007wings,
    author={Yolanda Gil and Varun Ratnakar and Ewa Deelman and Gaurang Mehta and Jihie Kim},
    url={http://pegasus.isi.edu/publications/gil-etal-iaai07.pdf},
    title={Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows},
    booktitle={Proceedings of the 19th Annual Conference on Innovative Applications of Artificial Intelligence (IAAI)},
    year={2007}
    }
  • Y. Gil, E. Deelman, M. Ellisman, T. Fahringer, G. Fox, D. Gannon, C. Goble, M. Livny, L. Moreau, and J. Myers, Examining the Challenges of Scientific Workflows, IEEE Computer, vol. 40, iss. 12, pp. 24-32, 2007. .
    [Bibtex]
    @article{gil2007challenges,
    author={Yolanda Gil and Ewa Deelman and M. Ellisman and Thomas Fahringer and Geoffrey Fox and Dennis Gannon and Carol Goble and Miron Livny and Luc Moreau and J. Myers},
    url={http://ieeexplore.ieee.org/search/srchabstract.jsp?arnumber=4404805},
    title={Examining the Challenges of Scientific Workflows},
    journal={IEEE Computer},
    volume={40},
    number={12},
    pages={24-32},
    month={December},
    year={2007}
    }
  • [PDF] J. Kim, E. Deelman, Y. Gil, G. Mehta, and V. Ratnakar, Provenance Trails in the Wings/Pegasus Workflow System, Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge, 2007. .
    [Bibtex]
    @article{kim2007provenance,
    author={Jihie Kim and Ewa Deelman and Yolanda Gil and Gaurang Mehta and Varun Ratnakar},
    url={http://pegasus.isi.edu/publications/CCPE07-Provenance.pdf},
    title={Provenance Trails in the Wings/Pegasus Workflow System},
    journal={Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge},
    year={2007}
    }
  • P. Maechling, E. Deelman, L. Zhao, R. Graves, G. Mehta, N. Gupta, J. Mehringer, C. Kesselman, S. Callaghan, D. Okaya, H. Francoeur, V. Gupta, Y. Cui, K. Vahi, T. Jordan, and E. Field, SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis Calculations, in Workflows for e-Science, , 2007. .
    [Bibtex]
    @inbook{maechling2007automating,
    author={Philip Maechling and Ewa Deelman and Li Zhao and Robert Graves and Gaurang Mehta and Nitin Gupta and John Mehringer and Carl Kesselman and Scott Callaghan and David Okaya and Hunter Francoeur and Vipin Gupta and Yifeng Cui and Karan Vahi and Thomas Jordan and Edward Field},
    title={SCEC CyberShake Workflows: Automating Probabilistic Seismic Hazard Analysis Calculations},
    booktitle={Workflows for e-Science},
    year={2007}
    }
  • [PDF] N. Mandal, E. Deelman, G. Mehta, M. Su, and K. Vahi, Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example, in Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS07), 2007. .
    [Bibtex]
    @inproceedings{mandal2007works,
    author={Nandita Mandal and Ewa Deelman and Gaurang Mehta and Mei-Hui Su and Karan Vahi},
    url={http://pegasus.isi.edu/publications/kepler-works07.pdf},
    title={Integrating Existing Scientific Workflow Systems: The Kepler/Pegasus Example},
    booktitle={Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS07)},
    year={2007}
    }
  • S. Miles, E. Deelman, P. Groth, K. Vahi, G. Mehta, and L. Moreau, Connecting Scientific Data to Scientific Experiments with Provenance, in Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007), 2007. .
    [Bibtex]
    @inproceedings{miles2007connecting,
    author={Simon Miles and Ewa Deelman and Paul Groth and Karan Vahi and Gaurang Mehta and Luc Moreau},
    url={http://portal.acm.org/citation.cfm?id=1332478.1333573},
    title={Connecting Scientific Data to Scientific Experiments with Provenance},
    booktitle={Third IEEE International Conference on e-Science and Grid Computing (e-Science 2007)},
    year={2007}
    }
  • [PDF] A. Ramakrishnan, G. Singh, H. Zhao, E. Deelman, R. Sakellariou, K. Vahi, K. Blackburn, D. Meyers, and M. Samidi, Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources, in Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid), 2007. .
    [Bibtex]
    @inproceedings{ramakrishnan2007data,
    author={Arun Ramakrishnan and Gurmeet Singh and Henan Zhao and Ewa Deelman and Rizos Sakellariou and Karan Vahi and Kent Blackburn and David Meyers and Michael Samidi},
    url={http://pegasus.isi.edu/publications/Ramakrishnan-DataIntensiveWorkflow.pdf},
    title={Scheduling Data-Intensive Workflows onto Storage-Constrained Distributed Resources},
    booktitle={Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid)},
    year={2007}
    }
  • [PDF] G. Singh, K. Vahi, A. Ramakrishnan, G. Mehta, E. Deelman, H. Zhao, R. Sakellariou, K. Blackburn, D. Brown, S. Fairhurst, D. Meyers, and B. G. Berriman, Optimizing Workflow Data Footprint, Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling, 2007. .
    [Bibtex]
    @article{singh2007optimizing,
    author={Gurmeet Singh and Karan Vahi and Arun Ramakrishnan and Gaurang Mehta and Ewa Deelman and Henan Zhao and Rizos Sakellariou and Kent Blackburn and Duncan Brown and Stephen Fairhurst and David Meyers and G. Bruce Berriman},
    url={http://pegasus.isi.edu/publications/Footprint-final.pdf},
    title={Optimizing Workflow Data Footprint},
    journal={Special issue of the Scientific Programming Journal dedicated to Dynamic Computational Workflows: Discovery, Optimisation and Scheduling},
    year={2007}
    }

2006

  • [PDF] E. Deelman, S. Callaghan, E. Field, H. Francoeur, R. Graves, N. Gupta, V. Gupta, T. H. Jordan, C. Kesselman, P. Maechling, J. Mehringer, G. Mehta, D. Okaya, K. Vahi, and L. Zhao, Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example, in e-Science 2006, 2006. (Best paper award).
    [Bibtex]
    @inproceedings{deelman2006cybershake,
    author={Ewa Deelman and Scott Callaghan and Edward Field and Hunter Francoeur and Robert Graves and Nitin Gupta and Vipin Gupta and Thomas H. Jordan and Carl Kesselman and Philip Maechling and John Mehringer and Gaurang Mehta and David Okaya and Karan Vahi and Li Zhao},
    url={http://pegasus.isi.edu/publications/deelman_Ecybershake.pdf},
    title={Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance tracking: The CyberShake Example},
    booktitle={e-Science 2006},
    year={2006},
    note={Best paper award}
    }
  • [PDF] E. Deelman and Y. Gil, Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges, in Workflows in e-Science, 2006. .
    [Bibtex]
    @inproceedings{deelman2006experiences,
    author={Ewa Deelman and Yolanda Gil},
    url={http://pegasus.isi.edu/publications/deelman_EworkflowExperiences_v2.pdf},
    title={Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges},
    booktitle={Workflows in e-Science},
    year={2006}
    }
  • [PDF] A. Lathers, M. Su, A. Kulungowski, A. W. Lin, G. Mehta, S. T. Peltier, E. Deelman, and M. H. Ellisman, Enabling Parallel Scientific Applications with Workflow Tools, in Proceedings of Challenges of Large Applications in Distributed Environments (CLADE), 2006. .
    [Bibtex]
    @inproceedings{lathers2006clade,
    author={Adam Lathers and Mei-Hui Su and Alex Kulungowski and Abel W. Lin and Gaurang Mehta and Steven T. Peltier and Ewa Deelman and Mark H. Ellisman},
    url={http://pegasus.isi.edu/publications/alathers_clade.pdf},
    title={Enabling Parallel Scientific Applications with Workflow Tools},
    booktitle={Proceedings of Challenges of Large Applications in Distributed Environments (CLADE)},
    year={2006}
    }
  • [PDF] V. Nefedova, R. Jacob, I. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M. Su, and K. Vahi, Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System, in e-Science 2006, 2006. .
    [Bibtex]
    @inproceedings{nefedova2006climage,
    author={Veronika Nefedova and Robert Jacob and Ian Foster and Zhengyu Liu and Yun Liu and Ewa Deelman and Gaurang Mehta and Mei-Hui Su and Karan Vahi},
    url={http://pegasus.isi.edu/publications/Foam-submit.pdf},
    title={Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System},
    booktitle={e-Science 2006},
    year={2006}
    }
  • [PDF] G. Singh, C. Kesselman, and E. Deelman, Application-level Resource Provisioning on the Grid, in e-Science 2006, 2006. .
    [Bibtex]
    @inproceedings{singh2006provisioning,
    author={Gurmeet Singh and Carl Kesselman and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/Singh-AppResProvisioning.pdf},
    title={Application-level Resource Provisioning on the Grid},
    booktitle={e-Science 2006},
    year={2006}
    }
  • I. Taylor, E. Deelman, D. Gannon, and M. Shield, Workflows for e-Science, Springer, 2006.
    [Bibtex]
    @book{taylor2006workflows,
    author={Ian Taylor and Ewa Deelman and Dennis Gannon and Matthew Shield},
    url={http://www.springer.com/computer/communication+networks/book/978-1-84628-519-6},
    title={Workflows for e-Science},
    publisher={Springer},
    year={2006}
    }
  • [PDF] J. Vöckler, G. Mehta, Y. Zhao, E. Deelman, and M. Wilde, Kickstarting Remote Applications, in Second International Workshop on Grid Computing Environments (GCE06), 2006. .
    [Bibtex]
    @inproceedings{voeckler2006kickstart,
    author={Jens-S. Vöckler and Gaurang Mehta and Yong Zhao and Ewa Deelman and Mike Wilde},
    url={http://pegasus.isi.edu/publications/kickstart.pdf},
    title={Kickstarting Remote Applications},
    booktitle={Second International Workshop on Grid Computing Environments (GCE06)},
    year={2006}
    }

2005

  • [PDF] J. Blythe, S. Jain, E. Deelman, Y. Gil, K. Vahi, A. Mandal, and K. Kennedy, Task Scheduling Strategies for Workflow-based Applications in Grids, in CCGrid 2005, 2005. .
    [Bibtex]
    @inproceedings{blythe2005scheduling,
    author={Jim Blythe and Sonal Jain and Ewa Deelman and Yolanda Gil and Karan Vahi and Anirban Mandal and Ken Kennedy},
    url={http://pegasus.isi.edu/publications/ccgrid05-correction.pdf},
    title={Task Scheduling Strategies for Workflow-based Applications in Grids},
    booktitle={CCGrid 2005},
    year={2005}
    }
  • [PDF] E. Deelman, G. Singh, M. Su, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, B. G. Berriman, J. Good, A. Laity, J. C. Jacob, and D. S. Katz, Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems, Scientific Programming Journal, vol. 13, iss. 3, pp. 219-237, 2005. .
    [Bibtex]
    @article{deelman2005pegasus,
    author={Ewa Deelman and Gurmeet Singh and Mei-Hui Su and James Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Karan Vahi and G. Bruce Berriman and John Good and Anastasia Laity and Joseph C. Jacob and Daniel S. Katz},
    url={http://pegasus.isi.edu/publications/Sci.pdf},
    title={Pegasus: a Framework for Mapping Complex Scientific Workflows onto Distributed Systems},
    journal={Scientific Programming Journal},
    volume={13},
    number={3},
    pages={219-237},
    year={2005}
    }
  • [PDF] D. S. Katz, J. C. Jacob, B. G. Berriman, J. Good, A. C. Laity, E. Deelman, C. Kesselman, G. Singh, M. Su, and T. A. Prince, Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid, in International Conference on Parallel Processing (ICPP), 2005. .
    [Bibtex]
    @inproceedings{katz2005comparison,
    author={Daniel S. Katz and Joseph C. Jacob and G. Bruce Berriman and John Good and Anastasia C. Laity and Ewa Deelman and Carl Kesselman and Gurmeet Singh and Mei-Hui Su and Thomas A. Prince},
    url={http://pegasus.isi.edu/publications/Comp.pdf},
    title={Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid},
    booktitle={International Conference on Parallel Processing (ICPP)},
    year={2005}
    }
  • [PDF] P. Maechling, H. Chalupsky, M. Dougherty, E. Deelman, Y. Gil, S. Gullapalli, V. Gupta, C. Kesselman, J. Kim, G. Mehta, B. Mendenhall, T. A. Russ, G. Singh, M. Spraragen, G. Staples, and K. Vahi, Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment, SIGMOD Record, vol. 34, iss. 3, pp. 24-30, 2005. .
    [Bibtex]
    @article{maechling2005sigmod,
    author={Philip Maechling and Hans Chalupsky and Maureen Dougherty and Ewa Deelman and Yolanda Gil and Sridhar Gullapalli and Vipin Gupta and Carl Kesselman and Jihie Kim and Gaurang Mehta and Brian Mendenhall and Thomas A. Russ and Gurmeet Singh and Marc Spraragen and Garrick Staples and Karan Vahi},
    url={http://pegasus.isi.edu/publications/scec.pdf},
    title={Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment},
    journal={SIGMOD Record},
    volume={34},
    number={3},
    pages={24-30},
    year={2005}
    }
  • [PDF] G. Singh, C. Kesselman, and E. Deelman, Optimizing Grid-Based Workflow Execution, Journal of Grid Computing, vol. 3, iss. 3-4, pp. 201-219, 2005. .
    [Bibtex]
    @article{singh2005optimizing,
    author={Gurmeet Singh and Carl Kesselman and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/Opt.pdf},
    title={Optimizing Grid-Based Workflow Execution},
    journal={Journal of Grid Computing},
    volume={3},
    number={3-4},
    pages={201-219},
    month={December},
    year={2005}
    }
  • [PDF] G. Singh, E. Deelman, G. Mehta, K. Vahi, M. Su, B. G. Berriman, J. Good, J. C. Jacob, D. S. Katz, A. Lazzarini, K. Blackburn, and S. Koranda, The Pegasus Portal: Web Based Grid Computing, in The 20th Annual ACM Symposium on Applied Computing, 2005. .
    [Bibtex]
    @inproceedings{singh2005portal,
    author={Gurmeet Singh and Ewa Deelman and Gaurang Mehta and Karan Vahi and Mei-Hui Su and G. Bruce Berriman and John Good and Joseph C. Jacob and Daniel S. Katz and Albert Lazzarini and Kent Blackburn and Scott Koranda},
    url={http://pegasus.isi.edu/publications/Pegasus_Portal_final2.pdf},
    title={The Pegasus Portal: Web Based Grid Computing},
    booktitle={The 20th Annual ACM Symposium on Applied Computing},
    year={2005}
    }

2004

  • [PDF] E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, S. Patil, M. Su, K. Vahi, and M. Livny, Pegasus: Mapping Scientific Workflows onto the Grid, in Across Grids Conference, 2004. .
    [Bibtex]
    @inproceedings{deelman2004pegasus,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Sonal Patil and Mei-Hui Su and Karan Vahi and Miron Livny},
    url={http://pegasus.isi.edu/publications/ewa/Pegasus_final.pdf},
    title={Pegasus: Mapping Scientific Workflows onto the Grid},
    booktitle={Across Grids Conference},
    year={2004}
    }
  • [PDF] Y. Gil, E. Deelman, J. Blythe, C. Kesselman, and H. Tangmurarunkit, Artificial Intelligence and Grids: Workflow Planning and Beyond, IEEE Intelligent Systems, 2004. .
    [Bibtex]
    @article{gil2004ai,
    author={Yolanda Gil and Ewa Deelman and Jim Blythe and Carl Kesselman and Hongsuda Tangmurarunkit},
    url={http://pegasus.isi.edu/publications/ewa/ieee_is04.pdf},
    title={Artificial Intelligence and Grids: Workflow Planning and Beyond},
    journal={IEEE Intelligent Systems},
    month={January},
    year={2004}
    }

2003

  • [PDF] B. G. Berriman, J. C. Good, A. C. Laity, A. Bergou, J. C. Jacob, D. S. Katz, E. Deelman, C. Kesselman, G. Singh, M. Su, and R. Williams, Montage: A Grid Enabled Image Mosaic Service for the National Virtual Observatory, in ADASS XIII, 2003. .
    [Bibtex]
    @inproceedings{berriman2003montage,
    author={G. Bruce Berriman and John C. Good and Anastasia C. Laity and A. Bergou and Joseph C. Jacob and Daniel S. Katz and Ewa Deelman and Carl Kesselman and Gurmeet Singh and Mei-Hui Su and Roy Williams},
    url={http://pegasus.isi.edu/publications/ewa/adass_03.pdf},
    title={Montage: A Grid Enabled Image Mosaic Service for the National Virtual Observatory},
    booktitle={ADASS XIII},
    year={2003}
    }
  • [PDF] J. Blythe, E. Deelman, and Y. Gil, Planning for workflow construction and maintenance on the Grid, in 2003 ICAPS Workshop on Planning for Web Services, 2003. .
    [Bibtex]
    @inproceedings{blythe2003workshop,
    author={Jim Blythe and Ewa Deelman and Yolanda Gil},
    url={http://pegasus.isi.edu/publications/ewa/icaps_workshop.pdf},
    title={Planning for workflow construction and maintenance on the Grid},
    booktitle={2003 ICAPS Workshop on Planning for Web Services},
    year={2003}
    }
  • [PDF] J. Blythe, E. Deelman, Y. Gil, C. Kesselman, A. Agarwal, G. Mehta, and K. Vahi, The Role of Planning in Grid Computing, in ICAPS, 2003. .
    [Bibtex]
    @inproceedings{blythe2003planning,
    author={Jim Blythe and Ewa Deelman and Yolanda Gil and Carl Kesselman and Amit Agarwal and Gaurang Mehta and Karan Vahi},
    url={http://pegasus.isi.edu/publications/ewa/icaps03.pdf},
    title={The Role of Planning in Grid Computing},
    booktitle={ICAPS},
    year={2003}
    }
  • J. Blythe, E. Deelman, Y. Gil, and C. Kesselman, Transparent Grid Computing: a Knowledge-Based Approach, in IAAI, 2003. .
    [Bibtex]
    @inproceedings{blythe2003transparent,
    author={Jim Blythe and Ewa Deelman and Yolanda Gil and Carl Kesselman},
    url={http://pegasus.isi.edu/publications/ewa/iaai_2003.pdf},
    title={Transparent Grid Computing: a Knowledge-Based Approach},
    booktitle={IAAI},
    year={2003}
    }
  • [PDF] J. Blythe, R. Cavanaugh, E. Deelman, I. Foster, S. Jang, C. Kesselman, K. Marzullo, R. Moore, V. Taylor, and X. Zhang, “Types of Editors and Specifications,” GriPhyN, Technical Report 2004-23, 2003 .
    [Bibtex]
    @techreport{blythe2003editors,
    author={James Blythe and Richard Cavanaugh and Ewa Deelman and Ian Foster and Seung-Hye Jang and Carl Kesselman and Keith Marzullo and Reagan Moore and Valerie Taylor and Xianan Zhang},
    url={http://pegasus.isi.edu/publications/editors.pdf},
    title={Types of Editors and Specifications},
    institution={GriPhyN},
    number={Technical Report 2004-23},
    year={2003}
    }
  • [PDF] E. Deelman, I. Foster, C. Kesselman, R. Moore, and S. Ranka, “Overall Architecture and Control Flow,” GriPhyN, Technical Report 2004-24, 2003 .
    [Bibtex]
    @techreport{deelman2003architecture,
    author={Ewa Deelman and Ian Foster and Carl Kesselman and Reagan Moore and Sanjay Ranka},
    url={http://pegasus.isi.edu/publications/architecture.pdf},
    title={Overall Architecture and Control Flow},
    institution={GriPhyN},
    number={Technical Report 2004-24},
    year={2003}
    }
  • [PDF] E. Deelman, R. Plante, C. Kesselman, G. Singh, M. Su, G. Greene, R. Hanisch, N. Gaffney, A. Volpicelli, J. Annis, V. Sekhri, T. Budavari, M. Nieto-Santisteban, W. O’Mullane, D. Bohlender, T. McGlynn, A. Rots, and O. Pevunova, Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory, in Supercomputing 2003, 2003. .
    [Bibtex]
    @inproceedings{deelman2003nvo,
    author={Ewa Deelman and Raymond Plante and Carl Kesselman and Gurmeet Singh and Mei-Hui Su and Gretchen Greene and Robert Hanisch and Niall Gaffney and Antonio Volpicelli and James Annis and Vijay Sekhri and Tamas Budavari and Maria Nieto-Santisteban and William O'Mullane and David Bohlender and Tom McGlynn and Arnold Rots and Olga Pevunova},
    url={http://pegasus.isi.edu/publications/ewa/galmorph_sc03.pdf},
    title={Grid-Based Galaxy Morphology Analysis for the National Virtual Observatory},
    booktitle={Supercomputing 2003},
    year={2003}
    }
  • [PDF] E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, S. Koranda, A. Lazzarini, and M. A. Papa, “From Metadata to Execution on the Grid Pegasus and the Pulsar Search,” GriPhyN, Technical Report 2003-15, 2003 .
    [Bibtex]
    @techreport{deelman2003metadata,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Karan Vahi and Scott Koranda and Albert Lazzarini and Maria Alessandra Papa},
    url={http://pegasus.isi.edu/publications/ewa/griphyn_2003_15.pdf},
    title={From Metadata to Execution on the Grid Pegasus and the Pulsar Search},
    institution={GriPhyN},
    number={Technical Report 2003-15},
    year={2003}
    }
  • [PDF] E. Deelman, J. Blythe, Y. Gil, C. Kesselman, S. Koranda, A. Lazzarini, G. Mehta, M. A. Papa, and K. Vahi, Pegasus and the Pulsar Search: From Metadata to Execution on the Grid, in Applications Grid Workshop, PPAM 2003, 2003. .
    [Bibtex]
    @inproceedings{deelman2003pulsar,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Scott Koranda and Albert Lazzarini and Gaurang Mehta and Maria Alessandra Papa and Karan Vahi},
    url={http://pegasus.isi.edu/publications/ewa/agw_ppam2003.pdf},
    title={Pegasus and the Pulsar Search: From Metadata to Execution on the Grid},
    booktitle={Applications Grid Workshop, PPAM 2003},
    year={2003}
    }
  • [PDF] E. Deelman, J. Blythe, Y. Gil, and C. Kesselman, Workflow Management in GriPhyN, in Grid Resource Management, J. Nabrzyski J. Schopf and J. Weglarz, Eds., Kluwer, 2003. .
    [Bibtex]
    @inbook{deelman2003griphyn,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman},
    url={http://pegasus.isi.edu/publications/ewa/grm_chapter.pdf},
    title={Workflow Management in GriPhyN},
    booktitle={Grid Resource Management},
    editor={J. Nabrzyski, J. Schopf, and J. Weglarz},
    publisher={Kluwer},
    year={2003}
    }
  • [PDF] E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A. Arbree, R. Cavanaugh, and S. Koranda, Mapping Abstract Complex Workflows onto Grid Environments, Journal of Grid Computing, vol. 1, iss. 1, pp. 25-39, 2003. .
    [Bibtex]
    @article{deelman2003mapping,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Karan Vahi and Kent Blackburn and Albert Lazzarini and Adam Arbree and Richard Cavanaugh and Scott Koranda},
    url={http://pegasus.isi.edu/publications/ewa/jogc.pdf},
    title={Mapping Abstract Complex Workflows onto Grid Environments},
    journal={Journal of Grid Computing},
    volume={1},
    number={1},
    pages={25-39},
    year={2003}
    }
  • [PDF] G. Singh and E. Deelman, “Montage on the Grid,” NVO, Technical Report, 2003 .
    [Bibtex]
    @techreport{singh2003nvo,
    author={Gurmeet Singh and Ewa Deelman},
    url={http://pegasus.isi.edu/publications/ewa/montage_pegasus.pdf},
    title={Montage on the Grid},
    institution={NVO},
    number={Technical Report},
    month={April},
    year={2003}
    }
  • [PDF] R. Williams, B. G. Berriman, E. Deelman, J. Good, J. C. Jacob, C. Kesselman, C. Lonsdale, S. Oliver, and T. A. Prince, Multi-Wavelength Image Space: Another Grid-Enabled Science, Journal of Concurrency and Computation: Practice and Experience, 2003. .
    [Bibtex]
    @article{williams2003image,
    author={Roy Williams and G. Bruce Berriman and Ewa Deelman and John Good and Joseph C. Jacob and Carl Kesselman and Carol Lonsdale and Seb Oliver and Thomas A. Prince},
    url={http://pegasus.isi.edu/publications/ewa/montage_paper.pdf},
    title={Multi-Wavelength Image Space: Another Grid-Enabled Science},
    journal={Journal of Concurrency and Computation: Practice and Experience},
    month={March},
    year={2003}
    }

2002

  • [PDF] E. Deelman, J. Blythe, Y. Gil, and C. Kesselman, “Pegasus: Planning for Execution in Grids,” GriPhyN, Technical Report 2002-20, 2002 .
    [Bibtex]
    @techreport{deelman2002pegasus,
    author={Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman},
    url={http://pegasus.isi.edu/publications/ewa/pegasus_overview.pdf},
    title={Pegasus: Planning for Execution in Grids},
    institution={GriPhyN},
    number={Technical Report 2002-20},
    year={2002}
    }
  • [PDF] E. Deelman, C. Kesselman, G. Mehta, L. Meshkat, L. Pearlman, K. Blackburn, P. Ehrens, A. Lazzarini, R. Williams, and S. Koranda, GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave Scientists, in High Performance Distributed Computing (HPDC), 2002. .
    [Bibtex]
    @inproceedings{deelman2002ligo,
    author={Ewa Deelman and Carl Kesselman and Gaurang Mehta and Leila Meshkat and Laura Pearlman and Kent Blackburn and Phil Ehrens and Albert Lazzarini and Roy Williams and Scott Koranda},
    url={http://pegasus.isi.edu/publications/ewa/hpdc11.pdf},
    title={GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave Scientists},
    booktitle={High Performance Distributed Computing (HPDC)},
    year={2002}
    }